Detail information of GWHGAAZE006701


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270764.20PREDICTED: cullin-4 [Vitis vinifera]
Swissprottr|Q8LGH4|CUL4_ARATH0Cullin-4
trEMBLtr|D7TK89|D7TK89_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI30911.3}
TAIR10AT5G46210.10cullin4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3038438630393872-
GWHAAZE00000002mRNA3038438630393872-
GWHAAZE00000002exon3038438630384499-
GWHAAZE00000002exon3038539830385478-
GWHAAZE00000002exon3038559330385673-
GWHAAZE00000002exon3038626830386348-
GWHAAZE00000002exon3038644130386578-
GWHAAZE00000002exon3038672930386860-
GWHAAZE00000002exon3038722730387287-
GWHAAZE00000002exon3038740130387507-
GWHAAZE00000002exon3038760130387654-
GWHAAZE00000002exon3038773630387837-
GWHAAZE00000002exon3038799530388120-
GWHAAZE00000002exon3038878030389067-
GWHAAZE00000002exon3038963030389752-
GWHAAZE00000002exon3039042030390600-
GWHAAZE00000002exon3039261730392963-
GWHAAZE00000002exon3039304730393197-
GWHAAZE00000002exon3039385930393872-
GWHAAZE00000002CDS3039385930393872-
GWHAAZE00000002CDS3039304730393197-
GWHAAZE00000002CDS3039261730392963-
GWHAAZE00000002CDS3039042030390600-
GWHAAZE00000002CDS3038963030389752-
GWHAAZE00000002CDS3038878030389067-
GWHAAZE00000002CDS3038799530388120-
GWHAAZE00000002CDS3038773630387837-
GWHAAZE00000002CDS3038760130387654-
GWHAAZE00000002CDS3038740130387507-
GWHAAZE00000002CDS3038722730387287-
GWHAAZE00000002CDS3038672930386860-
GWHAAZE00000002CDS3038644130386578-
GWHAAZE00000002CDS3038626830386348-
GWHAAZE00000002CDS3038559330385673-
GWHAAZE00000002CDS3038539830385478-
GWHAAZE00000002CDS3038438630384499-
Transcript Sequence

Network for GWHGAAZE006701

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00888.23Cullin306278.80E-205
PF10557.10Cullin_Nedd86587181.00E-21
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyCullin

KEGG pathway

KO Enzyme pathway mapID
K10609CUL4 Ubiquitin mediated proteolysis map04120
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0031461cellular_componentcullin-RING ubiquitin ligase complex
GO:0031625molecular_functionubiquitin protein ligase binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.210
SRR3591706second leaf15.228
SRR3591707mature leaf15.025
SRR3591708Shoot apex22.438
SRR3591709Stem33.167
SRR3591710White floral bud25.000
SRR3591711White flower27.854
SRR3591712Green floral bud23.131
SRR3591713Yellow flower22.782
SRP173429 SRR8316895Juvenile bud stage 14.277
SRR8316896Juvenile bud stage 21.008
SRR8316897Juvenile bud stage 10.747
SRR8316894Third green stage 8.661
SRR8316900Third green stage 23.013
SRR8316901Third green stage 20.818
SRR8316898Complete white stage 5.925
SRR8316899Complete white stage 21.953
SRR8316903Complete white stage 13.850
SRR8316902Silver flowering stage8.323
SRR8316904Silver flowering stage14.034
SRR8316905Silver flowering stage6.058
SRR8316906Gold flowering stage 19.939
SRR8316907Gold flowering stage 21.513
SRR8316908Gold flowering stage 18.713
SRP132670SRR6706286Control19.549
SRR6706287Light intensity 50%19.085
SRR6706288Light intensity 20%19.406
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.824
CNS0095593Slightly white alabastrum(diploid) 214.415
CNS0095594Slightly white alabastrum(diploid) 313.607
CNS0095595Whole white alabastrum(diploid) 214.764
CNS0095596Whole white alabastrum(diploid) 313.213
CNS0095597Whole white alabastrum(diploid) 414.950
CNS0095598Silvery flower (diploied) 117.264
CNS0095599Silvery flower (diploied) 215.070
CNS0095600Silvery flower (diploied) 320.233
CNS0095601Golden flower (diploid) 113.965
CNS0095602Golden flower (diploid) 220.790
CNS0095603Golden flower (diploid) 321.515
CNS0095604Slightly white alabastrum(tetraploid) 116.708
CNS0095605Slightly white alabastrum(tetraploid) 215.598
CNS0095606Slightly white alabastrum(tetraploid) 324.833
CNS0095607Whole white alabastrum(tetraploid) 113.028
CNS0095608Whole white alabastrum(tetraploid) 212.398
CNS0095609Whole white alabastrum(tetraploid) 320.082
CNS0095610Silvery flower (tetraploid) 123.566
CNS0095611Silvery flower (tetraploid) 221.523
CNS0095612Silvery flower (tetraploid) 317.352
CNS0095613Golden flower (tetraploid) 114.383
CNS0095614Golden flower (tetraploid) 218.923
CNS0095615Golden flower (tetraploid) 319.035
CRA001975CRR073297Stem 122.607
CRR073298Stem 222.477
CRR073299Stem 319.357
CRR073300Leaf 123.530
CRR073301Leaf 217.158
CRR073302Leaf 318.546
CRR073303Juvenile bud 116.934
CRR073304Juvenile bud 212.487
CRR073305Juvenile bud 319.697
CRR073306Third green 18.006
CRR073307Third green 26.755
CRR073308Third green 39.516
CRR073309Second white 18.213
CRR073310Second white 29.638
CRR073311Second white 39.617
CRR073312Silver flowering 113.249
CRR073313Silver flowering 210.039
CRR073314Silver flowering 310.233
CRR073315Gold flowering 111.096
CRR073316Gold flowering 213.450
CRR073317Gold flowering 311.110
CRR073318Tawny withering 115.306
CRR073319Tawny withering 214.250
CRR073320Tawny withering 317.338