Detail information of GWHGAAZE006702


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010247870.13.04685E-16PREDICTED: cullin-4-like isoform X1 [Nelumbo nucifera]
Swissprottr|Q8LGH4|CUL4_ARATH0.000009Cullin-4
trEMBLtr|A9LK40|A9LK40_SOLLC3E-12Cullin 4 {ECO:0000313|EMBL:ABX09988.1}
TAIR10AT5G46210.10.0002cullin4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3039647230397010-
GWHAAZE00000002mRNA3039647230397010-
GWHAAZE00000002exon3039647230396482-
GWHAAZE00000002exon3039667430397010-
GWHAAZE00000002CDS3039667430397010-
GWHAAZE00000002CDS3039647230396482-
Transcript Sequence

Network for GWHGAAZE006702

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10609CUL4 Ubiquitin mediated proteolysis map04120
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.698
SRR3591706second leaf14.391
SRR3591707mature leaf9.973
SRR3591708Shoot apex19.449
SRR3591709Stem20.049
SRR3591710White floral bud26.394
SRR3591711White flower20.440
SRR3591712Green floral bud17.988
SRR3591713Yellow flower20.513
SRP173429 SRR8316895Juvenile bud stage 8.044
SRR8316896Juvenile bud stage 14.837
SRR8316897Juvenile bud stage 7.028
SRR8316894Third green stage 6.072
SRR8316900Third green stage 18.888
SRR8316901Third green stage 14.654
SRR8316898Complete white stage 6.202
SRR8316899Complete white stage 25.345
SRR8316903Complete white stage 10.574
SRR8316902Silver flowering stage6.979
SRR8316904Silver flowering stage11.294
SRR8316905Silver flowering stage8.313
SRR8316906Gold flowering stage 20.359
SRR8316907Gold flowering stage 18.206
SRR8316908Gold flowering stage 14.410
SRP132670SRR6706286Control35.482
SRR6706287Light intensity 50%35.283
SRR6706288Light intensity 20%32.897
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.546
CNS0095593Slightly white alabastrum(diploid) 24.378
CNS0095594Slightly white alabastrum(diploid) 32.682
CNS0095595Whole white alabastrum(diploid) 25.359
CNS0095596Whole white alabastrum(diploid) 33.526
CNS0095597Whole white alabastrum(diploid) 44.793
CNS0095598Silvery flower (diploied) 18.931
CNS0095599Silvery flower (diploied) 210.558
CNS0095600Silvery flower (diploied) 320.638
CNS0095601Golden flower (diploid) 15.309
CNS0095602Golden flower (diploid) 221.415
CNS0095603Golden flower (diploid) 324.669
CNS0095604Slightly white alabastrum(tetraploid) 16.381
CNS0095605Slightly white alabastrum(tetraploid) 25.851
CNS0095606Slightly white alabastrum(tetraploid) 313.997
CNS0095607Whole white alabastrum(tetraploid) 13.721
CNS0095608Whole white alabastrum(tetraploid) 25.151
CNS0095609Whole white alabastrum(tetraploid) 314.105
CNS0095610Silvery flower (tetraploid) 116.583
CNS0095611Silvery flower (tetraploid) 221.950
CNS0095612Silvery flower (tetraploid) 320.258
CNS0095613Golden flower (tetraploid) 16.990
CNS0095614Golden flower (tetraploid) 214.088
CNS0095615Golden flower (tetraploid) 319.097
CRA001975CRR073297Stem 118.626
CRR073298Stem 222.618
CRR073299Stem 316.358
CRR073300Leaf 127.902
CRR073301Leaf 220.288
CRR073302Leaf 318.668
CRR073303Juvenile bud 117.904
CRR073304Juvenile bud 217.656
CRR073305Juvenile bud 324.176
CRR073306Third green 114.423
CRR073307Third green 210.266
CRR073308Third green 311.289
CRR073309Second white 111.612
CRR073310Second white 212.799
CRR073311Second white 311.427
CRR073312Silver flowering 114.754
CRR073313Silver flowering 214.993
CRR073314Silver flowering 311.248
CRR073315Gold flowering 18.176
CRR073316Gold flowering 215.718
CRR073317Gold flowering 311.708
CRR073318Tawny withering 113.013
CRR073319Tawny withering 211.223
CRR073320Tawny withering 36.906