Gene detail

Detail information of GWHGAAZE006706

Functional Annotation

Database	Orthologs	Annotation
Nr	AHF22084.1	OSC2 [Artemisia annua]
Swissprot	tr\|Q08IT1\|DADIS_PANGI	Dammarenediol II synthase
trEMBL	tr\|A0A068UWI8\|A0A068UWI8_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_68 {ECO:0000313\|EMBL:CDP12624.1}
TAIR10	AT1G78960.1	lupeol synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30544184	30548668	+
GWHAAZE00000002	mRNA	30544184	30548668	+
GWHAAZE00000002	exon	30544184	30544384	+
GWHAAZE00000002	exon	30544717	30544905	+
GWHAAZE00000002	exon	30545062	30545151	+
GWHAAZE00000002	exon	30545593	30545745	+
GWHAAZE00000002	exon	30545886	30545970	+
GWHAAZE00000002	exon	30546069	30546299	+
GWHAAZE00000002	exon	30546532	30546764	+
GWHAAZE00000002	exon	30546867	30546989	+
GWHAAZE00000002	exon	30547103	30547201	+
GWHAAZE00000002	exon	30547308	30547367	+
GWHAAZE00000002	exon	30547521	30547567	+
GWHAAZE00000002	exon	30547671	30547814	+
GWHAAZE00000002	exon	30547934	30548111	+
GWHAAZE00000002	exon	30548273	30548353	+
GWHAAZE00000002	exon	30548462	30548668	+
GWHAAZE00000002	CDS	30544184	30544384	+
GWHAAZE00000002	CDS	30544717	30544905	+
GWHAAZE00000002	CDS	30545062	30545151	+
GWHAAZE00000002	CDS	30545593	30545745	+
GWHAAZE00000002	CDS	30545886	30545970	+
GWHAAZE00000002	CDS	30546069	30546299	+
GWHAAZE00000002	CDS	30546532	30546764	+
GWHAAZE00000002	CDS	30546867	30546989	+
GWHAAZE00000002	CDS	30547103	30547201	+
GWHAAZE00000002	CDS	30547308	30547367	+
GWHAAZE00000002	CDS	30547521	30547567	+
GWHAAZE00000002	CDS	30547671	30547814	+
GWHAAZE00000002	CDS	30547934	30548111	+
GWHAAZE00000002	CDS	30548273	30548353	+
GWHAAZE00000002	CDS	30548462	30548668	+

Transcript Sequence
>GWHTAAZE006714 ATGTGGAAGCTCAAAATTGCTGAAGGCAATGGTCCATATTTGTATAGCACTAACAATTTTGTTGGTAGACAAATTTGGGAATTTGAGCCCGACAGTGGAACGCCTGAGGAGAGAGAAGAGGTCGAAAAAGCTCGCAATTATTATCTGAATAATCGACGACAGGGAGTTCATCCATGTGGAGATATGCTCATGAGAATGCAGCTTATTAAGGAAAGCGGAATTGATCTTCTAAGCATACCGCCGGTGAGACTAGGGGAAAATGAAGAAGTGAACTACGAAGCAGTTACAACAGCAGTGAAGAAGGCTCTTCGATTGAATCGCGCAATTCAAGCACGAGACGGACACTGGCCAGCTGAAAATGCAGGGCCTTTGTTTTTCACACCACCACTGCTCATTGCCCTCTACATAAGTGGAGCAATTAATACTATTCTAACCAGGGAACACAAGAAGGAGATGATTCGCTACATTTACAACCATCAAAATGATGATGGTGGATGGGGATTCTATATTGAAGGTCACAGCACCATGATTGGATCAGCACTCAGCTATGTGGCTTTACGTTTGCTAGGAGAAGGACCTGATGATGGAAATGGCGCAATTGATAGAGGGCGAAAGTGGATCCTTGATCACGGGGTTCTTGGAGTTTATGAATGGGAAGGGTGCAATCCATTGCCCCCAGAGTTTTGGCTTTTTCCTTCAAGCATGCCTTATCATCCAGCAAAAATGTGGTGTTACTGTCGCTCAACTTACATGCCTATGTCATATTTATATGGCAAGAAATTTCATGGACCGATCATGGATCTTGTTTTAGCTTTGAGGCAAGAAATTCATTGCATACCTTATGGGGAGATAGATTGGAATAAACAACGCCATAATTGTTGCAAAGATGATCTCTTCTACCCTCATAGCCCCATACAAGATCTACTTTGGGATGGCCTTCACTACATAAAGTTTACAAATGATGTGTTGGTGGGCAGAGAATCCAAACGGGACGAGTTCAAACATCACATTGCTAGAGTTCCCGACTACTTATGGCTTGCTGAGGACGGAATGAAAATGCAAAGCTTTGGTAGTCAATTATGGGATTGTGTTCTTGCAACTCAAGCAATTCTTGCAAGTAACATGGTTGAGGAATATGGGGATTCTCTTAAAAAGGCTCACTTTTACATAAAAGAATCACAGGTAAAAGAAAATCCATCAGGAGATTTCACAAAAATGTGTCGTCAATTTACCAAAGGATCATGGACTTTCTCTGATCAAGATCAGGGATGGGTTGTTTCAGATTGCACAGCTGAAGCACTAAAGTGTCTACTAATGCTTTCGCAAATGCCATCGGAAATTGCTGGAGAAAAAGTTGATGTTGAGAGATTATACGAAGCAGTGAACGTCCTTCTCTATGTCCAAAGTCCTGAAAGTGGTGGTTTCGCTATTTGGGAGCCACCAGTTCCACAACCTTACTTGCAAATGCTGAATCCATCAGAACTGTTCGCCGACATTGTTGTTGAGAAAGAGCATGTTGAGTGCACAGCATCAATAATCCAAGCTTTGCTAGCATTCAAACACTTGCATCCAGGGCATCGTGAGAAAGAAATAGAAATATCTGTCAGAAAAGCCATACGTTTTGTTGAAGAAAAACAATGGCATGATGGATCATGGTATGGATACTGGGGAATTTGCTTCCTATATGGCACATTCTTTGTGCTATCAGGGTTAGTTGCTGCCGGAAAGACATATAACAATAGCAAAGTGGTTCGCAAAGCTGTTCAATTTTTCCTTTCAACACAAAATGAAGAGGGTGGTTGGGGTGAAAGCATCCAATCTTGTCCAAGTGAGAAATTTACACCACTTGATGGAAATCGTACAAACTTGGTACAAACATCATGGGCAATGTTGGGTCTCATGTTAGGTGGTCAGGCCGAGAGAGATCCGATGCCTTTACATAAAGCAGCAAAGCTATTGATTAATGCGCAAATGGATAATGGAGATTTCCCTCAGCAGGAGATCACAGGAGTTTACATGAAGAATTGCATGCTACATTATGCTGAATATAGAAACATTTTTCCATGTTGGGCACTTGGAGAATATCGAAAACACGTCTGGGTGCCTAATCAATTACTTTGA

Network for GWHGAAZE006706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13249.7	SQHop_cyclase_N	101	265	4.70E-23
PF13243.7	SQHop_cyclase_C	358	697	5.40E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15813	LUP4	Biosynthesis of secondary metabolites	map01110
K15813	LUP4	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0000250	molecular_function	lanosterol synthase activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.031
	SRR3591706	second leaf	0.066
	SRR3591707	mature leaf	0.131
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.088
	SRR3591710	White floral bud	0.291
	SRR3591711	White flower	1.291
	SRR3591712	Green floral bud	0.164
	SRR3591713	Yellow flower	0.764
SRP173429	SRR8316895	Juvenile bud stage	0.054
	SRR8316896	Juvenile bud stage	0.789
	SRR8316897	Juvenile bud stage	0.401
	SRR8316894	Third green stage	0.750
	SRR8316900	Third green stage	0.083
	SRR8316901	Third green stage	0.416
	SRR8316898	Complete white stage	0.375
	SRR8316899	Complete white stage	0.507
	SRR8316903	Complete white stage	0.541
	SRR8316902	Silver flowering stage	1.063
	SRR8316904	Silver flowering stage	2.610
	SRR8316905	Silver flowering stage	0.767
	SRR8316906	Gold flowering stage	12.826
	SRR8316907	Gold flowering stage	1.634
	SRR8316908	Gold flowering stage	11.555
SRP132670	SRR6706286	Control	0.570
	SRR6706287	Light intensity 50%	0.591
	SRR6706288	Light intensity 20%	0.312
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.078
	CNS0095593	Slightly white alabastrum(diploid) 2	0.489
	CNS0095594	Slightly white alabastrum(diploid) 3	0.016
	CNS0095595	Whole white alabastrum(diploid) 2	0.184
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.151
	CNS0095598	Silvery flower (diploied) 1	0.072
	CNS0095599	Silvery flower (diploied) 2	0.139
	CNS0095600	Silvery flower (diploied) 3	1.958
	CNS0095601	Golden flower (diploid) 1	0.290
	CNS0095602	Golden flower (diploid) 2	2.237
	CNS0095603	Golden flower (diploid) 3	1.692
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.291
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.172
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.430
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.041
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.043
	CNS0095610	Silvery flower (tetraploid) 1	0.709
	CNS0095611	Silvery flower (tetraploid) 2	0.147
	CNS0095612	Silvery flower (tetraploid) 3	0.448
	CNS0095613	Golden flower (tetraploid) 1	0.587
	CNS0095614	Golden flower (tetraploid) 2	2.020
	CNS0095615	Golden flower (tetraploid) 3	0.085
CRA001975	CRR073297	Stem 1	0.091
	CRR073298	Stem 2	0.002
	CRR073299	Stem 3	0.040
	CRR073300	Leaf 1	0.137
	CRR073301	Leaf 2	0.026
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.020
	CRR073306	Third green 1	0.027
	CRR073307	Third green 2	0.160
	CRR073308	Third green 3	0.068
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.075
	CRR073311	Second white 3	0.219
	CRR073312	Silver flowering 1	0.783
	CRR073313	Silver flowering 2	0.996
	CRR073314	Silver flowering 3	0.407
	CRR073315	Gold flowering 1	0.221
	CRR073316	Gold flowering 2	0.156
	CRR073317	Gold flowering 3	0.051
	CRR073318	Tawny withering 1	1.282
	CRR073319	Tawny withering 2	2.383
	CRR073320	Tawny withering 3	0.168