Gene detail

Detail information of GWHGAAZE006722

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010250379.1	PREDICTED: probable beta-D-xylosidase 5 [Nelumbo nucifera]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|A0A067GF39\|A0A067GF39_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO77255.1}
TAIR10	AT3G19620.1	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30878039	30881888	+
GWHAAZE00000002	mRNA	30878039	30881888	+
GWHAAZE00000002	exon	30878039	30878464	+
GWHAAZE00000002	exon	30878882	30879187	+
GWHAAZE00000002	exon	30879395	30879564	+
GWHAAZE00000002	exon	30879691	30879791	+
GWHAAZE00000002	exon	30879907	30880245	+
GWHAAZE00000002	exon	30880667	30881080	+
GWHAAZE00000002	exon	30881263	30881888	+
GWHAAZE00000002	CDS	30878039	30878464	+
GWHAAZE00000002	CDS	30878882	30879187	+
GWHAAZE00000002	CDS	30879395	30879564	+
GWHAAZE00000002	CDS	30879691	30879791	+
GWHAAZE00000002	CDS	30879907	30880245	+
GWHAAZE00000002	CDS	30880667	30881080	+
GWHAAZE00000002	CDS	30881263	30881888	+

Transcript Sequence
>GWHTAAZE006730 GTTTTTGGTGCATCAACTCGCATTTCTAGGAAACTCTCTATTAATGAAGGCACATTTAATCCAACCGGAAATTTTTCCGGCCATGTATGCGATCCTTCAAAGTTCGCAAAATTAGGACTTGAAATGAATAAATTTGCATATTGTGACAAGTCGCTGCCCTATGAAATCAGGGTTAAGGATTTGATCGATCGGATGACCTTGGTCGAAAAATCGCATCAAATCGGAGATAATGCAGTAGGGGTGGACAGATTAGGGTTACCGAGGTACGAGTGGTGGTCGGAGGCATTGCATGGGGTTTCCAATGTTGGTCAAGGTGATAGTAAGGCTACATTTTTTGATGAAATTGTGCCTGGTGCTACAAGTTTTCCTACTGTCATTAGCTTGGCTGCTTCTTTTAATCAGTCTAAATGGAAGACTATTGGCCAGGTTGTCTCAACCGAAGCAAGAGCAATGTACAATCTAGGTCATGCTGGGTTAACATTTTGGAGTCCAAATATTAATGTAGTTAGGGACCCGCGATGGGGTAGGGCCCTTGAAACTCCGGGCGAAGACCCTTTCCTTGTTGGTACATACGCCACTAATTATGTTAGAGGCTTACAAGATGTTGAAGGGACCGAAAACACACATGATTTGAACACAAGACCTCTCAAAGTTGCTGCTTGTTGTAAACATTACGCGGCATACGATGTTGATGATTGGCTCGGTGTTGATCGCTTCCATTTTGATCCTAAGGTGCAAGAGCAAGATATGGTGGAGACATTTGTGAGACCATTTGAAATGTGTGTAAAAGATGGGGATGTAGCAAGTGTGATGTGCTCTTATAACCAAGTCAATGGCCTCCCTACTTGTGCTGATCCAAAGCTCTTGAAAGATACCATTAGAGGAGAATGGAATCTTCATGGATACATTGTGTCAGATTGTGATTCAATTGAAGTAATGGTAGATTCTCAAAAGTACCTCAAAGACACACCTGAAGAAGCTGTTGCACAAACCCTAAAAGCAGGTTTGGATTTGGACTGTGGAAAGTTCTACCCGGATCATGTTAGCAACGCAGTCATACAAGGCAAAGTTAGTGAATCCGAAATAGATTCGGCTCTGAAAAACAATTACATTACACTAATGAGGCTAGGGTTTTTTGATGGAAGTCCCGCGTATGAATCTCTTGGAAAAGAAAGTATTTGTAGTATAGAACACATGAAATTGGCAGCCGAAGCAGCGAGAGAAGGAATTGTTCTTTTGAAGAATGAGAATCAAACTTTGCCATTAAATTCTGGAGTTAAAACTTTAGCTGTGGTTGGTCCTCATGCAAATGCAACTGAAGCTATGATTGGAAATTATGCAGGTATCCCATGCCGGTACATTTCGCCAATTGATGGATTCAGAGACTATAGTGTAGTGAAATATGAAATGGGGTGTGATAAAGTTGCATGCACAAATGATACATTTATATCCAATGCAATGGAGGCTGCAAAAAATGCAGATGCCACAGTGGTTGTAGTAGGATTAGATTTATCAGCCGAGGCTGAGAGCTTGGACCGTGTCGACCTACTTCTTCCAGGTTTTCAAAATCAATTGATCAAACAAGTTGCTATAGTGTCGAAAGGCCCGGTGATCTTGGTTGTCCTGTCTGCTGGTGGTGTCGATATTTCTGAAGCGAAAAATGATCCTAATGTTAAGGCTATATTGTGGGCTGGGTACCCTGGTGAAGAAGGTGGTAAGGCTATTGCTGATGTTGTTTTTGGAAATTATAATCCAGGTGGAAGATTACCTCTTACATGGTTTGAAAACAACTACGTTGACAAGCTCCCCATGACTTCAATGCCACTGAGACCCATTGACAATTTAGGCTACCCCGGAAGAACATACAAATTTTACAATGGACCCACGATTTACCCATTCGGATTCGGCTTAAGTTACACAAATTTTACCTCCACTATCGTCTCGACTTCAACCAAGTCATTCGACATTAAACTTGACAAATTGCAACATTGTCGCGATATCAATTACTCCGATGGGGCCTACAAGCCCCCGTGCCCTGCAGTTTTGATCGATGACTTAAAATGCGATGTGGATAATCAACTCCAGTTTGAGTTTGTGGTCAAAGTCAACAATACTGGCGATAGAGACGGGAGTGAAGTTGTTATGGTTTATGATGTGCCCCCTACAGGTATATCCGGCGCGCCTCTGAAACAGTTGATTGGCTTTCAAAAGGTTTTTGTGAAGGCGGGAGCAAGTGAAGAAGTTGCATTTGTGATGAATGCTTGCAAGAGCTTGTTTATTGTCGATTTCACCGCATATCGACTGTTGCCAGCTGGTGGGCACACCATTGTGATCGGTGACAATGTAGTGTCATTCCCTCTTCGTGTTAACTTTGAGTACTAG

Network for GWHGAAZE006722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	118	366	2.30E-39
PF01915.23	Glyco_hydro_3_C	410	639	1.80E-53
PF14310.7	Fn3-like	712	781	6.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15920	XYL4	Metabolic pathways	map01100
K15920	XYL4	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.003
	SRR3591707	mature leaf	0.017
	SRR3591708	Shoot apex	0.007
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.002
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.368
	SRR8316896	Juvenile bud stage	0.723
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.048
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.053
	SRR8316898	Complete white stage	0.002
	SRR8316899	Complete white stage	0.001
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.404
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.453
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.001
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.001
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.032
	CNS0095603	Golden flower (diploid) 3	0.001
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.065
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.049
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.001
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.006
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.003
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.001
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.466
	CRR073298	Stem 2	0.157
	CRR073299	Stem 3	0.375
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.001
	CRR073316	Gold flowering 2	0.002
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000