Detail information of GWHGAAZE006723


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFO67221.11.01012E-18putative chlorophyll a/b binding protein, partial [Aralia elata]
Swissprottr|P13851|CB21_SINAL1E-19Chlorophyll a-b binding protein 1, chloroplastic (Precursor)
trEMBLtr|I7DFU7|I7DFU7_ARAEL4E-19Putative chlorophyll a/b binding protein {ECO:0000313|EMBL:AFO67221.1} (Fragment)
TAIR10AT2G34430.13E-15light-harvesting chlorophyll-protein complex II subunit B1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3094611130946406-
GWHAAZE00000002mRNA3094611130946406-
GWHAAZE00000002exon3094611130946152-
GWHAAZE00000002exon3094625130946406-
GWHAAZE00000002CDS3094625130946406-
GWHAAZE00000002CDS3094611130946152-
Transcript Sequence

Network for GWHGAAZE006723

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08912LHCB1 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.208
SRR3591706second leaf186.467
SRR3591707mature leaf32.900
SRR3591708Shoot apex8.809
SRR3591709Stem9.374
SRR3591710White floral bud0.488
SRR3591711White flower0.000
SRR3591712Green floral bud0.046
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.081
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.095
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.008
SRR6706288Light intensity 20%0.019
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.212
CNS0095593Slightly white alabastrum(diploid) 20.099
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.035
CNS0095596Whole white alabastrum(diploid) 30.026
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.372
CNS0095599Silvery flower (diploied) 20.155
CNS0095600Silvery flower (diploied) 30.304
CNS0095601Golden flower (diploid) 10.110
CNS0095602Golden flower (diploid) 21.176
CNS0095603Golden flower (diploid) 30.417
CNS0095604Slightly white alabastrum(tetraploid) 10.121
CNS0095605Slightly white alabastrum(tetraploid) 20.548
CNS0095606Slightly white alabastrum(tetraploid) 30.235
CNS0095607Whole white alabastrum(tetraploid) 10.047
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.108
CNS0095610Silvery flower (tetraploid) 11.304
CNS0095611Silvery flower (tetraploid) 23.284
CNS0095612Silvery flower (tetraploid) 30.367
CNS0095613Golden flower (tetraploid) 10.144
CNS0095614Golden flower (tetraploid) 21.763
CNS0095615Golden flower (tetraploid) 30.862
CRA001975CRR073297Stem 10.173
CRR073298Stem 20.197
CRR073299Stem 31.188
CRR073300Leaf 10.000
CRR073301Leaf 20.063
CRR073302Leaf 30.146
CRR073303Juvenile bud 10.333
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.111
CRR073307Third green 20.000
CRR073308Third green 30.039
CRR073309Second white 11.218
CRR073310Second white 20.119
CRR073311Second white 30.112
CRR073312Silver flowering 10.138
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.033
CRR073315Gold flowering 19.691
CRR073316Gold flowering 26.525
CRR073317Gold flowering 313.676
CRR073318Tawny withering 10.813
CRR073319Tawny withering 20.185
CRR073320Tawny withering 30.080