Gene detail

Detail information of GWHGAAZE006724

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004147416.1	4.4882E-180	PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like [Cucumis sativus]
Swissprot	tr\|P13851\|CB21_SINAL	9E-177	Chlorophyll a-b binding protein 1, chloroplastic (Precursor)
trEMBL	tr\|A0A0A0LX23\|A0A0A0LX23_CUCSA	2E-180	Chlorophyll A/B binding protein {ECO:0000313\|EMBL:KGN65549.1}
TAIR10	AT2G34430.1	6E-139	light-harvesting chlorophyll-protein complex II subunit B1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30947997	30948794	-
GWHAAZE00000002	mRNA	30947997	30948794	-
GWHAAZE00000002	exon	30947997	30948794	-
GWHAAZE00000002	CDS	30947997	30948794	-

Transcript Sequence
>GWHTAAZE006732 ATGGCTGCTTCAAAAATGGCTCTCTCTTCCCCATCTTTTGCCGGTAAGGTGGTGAAACTCACTCCGGCAACATCGGAGCTTTTTGGCACCCCAAGAGTTTCCATGAGGAAAACCACCAAGCCTGCTGCCTCATCCGGCAGCCCATGGTACGGCCCAGACCGGGTTAAGTACTTGGGCCCATTTTCTGGTGAGCCTCCATCCTACCTAACTGGTGAATTCCCTGGTGACTACGGGTGGGACACTGCCGGACTATCGGCCGACCCAGAAACCTTTGCCAAGAACCGTGAGCTCGAAGTGATCCATAGCCGATGGGCCATGCTGGGAGCCCTAGGGTGCGTTTTTCCCGAGCTTTTGTCCCGAAACGGTGTCAAATTTGGCGAAGCAGTGTGGTTCAAGGCTGGAGCCCAAATCTTTAGTGAGGGTGGGCTAGATTATTTGGGAAACCCAAGCCTGGTCCATGCTCAAAGCATCTTGGCCATTTGGGCTACACAAGTTATCTTGATGGGGGCTGTTGAGGGGTACCGGGTTGCTGGTGGGCCCCTCGGTGAGGTGGAGGATCCACTTTACCCGGGTGGAAGCTTTGATCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCGGAGTTGAAGGTGAAGGAGCTAAAGAATGGGAGACTTGCTATGTTTTCTATGTTTGGGTTCTTTGTTCAAGCTATTGTGACTGGAAAAGGGCCACTGGAGAACCTTGCTGACCATTTGGCTGATCCAGTTAACAACAATGCCTGGGCTTATGCTACAAACTTTGTACCCGGAAAGTAA

Network for GWHGAAZE006724

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	65	231	4.90E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08912	LHCB1	Metabolic pathways	map01100
K08912	LHCB1	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	867.708
	SRR3591706	second leaf	2554.200
	SRR3591707	mature leaf	1734.079
	SRR3591708	Shoot apex	1624.628
	SRR3591709	Stem	919.271
	SRR3591710	White floral bud	61.124
	SRR3591711	White flower	121.670
	SRR3591712	Green floral bud	36.725
	SRR3591713	Yellow flower	9.628
SRP173429	SRR8316895	Juvenile bud stage	25.490
	SRR8316896	Juvenile bud stage	9.834
	SRR8316897	Juvenile bud stage	81.412
	SRR8316894	Third green stage	3.848
	SRR8316900	Third green stage	1.183
	SRR8316901	Third green stage	2.489
	SRR8316898	Complete white stage	0.513
	SRR8316899	Complete white stage	2.239
	SRR8316903	Complete white stage	0.981
	SRR8316902	Silver flowering stage	0.346
	SRR8316904	Silver flowering stage	0.469
	SRR8316905	Silver flowering stage	0.121
	SRR8316906	Gold flowering stage	1.090
	SRR8316907	Gold flowering stage	0.345
	SRR8316908	Gold flowering stage	2.203
SRP132670	SRR6706286	Control	5.938
	SRR6706287	Light intensity 50%	3.121
	SRR6706288	Light intensity 20%	2.651
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.351
	CNS0095593	Slightly white alabastrum(diploid) 2	20.503
	CNS0095594	Slightly white alabastrum(diploid) 3	14.494
	CNS0095595	Whole white alabastrum(diploid) 2	12.758
	CNS0095596	Whole white alabastrum(diploid) 3	2.692
	CNS0095597	Whole white alabastrum(diploid) 4	6.033
	CNS0095598	Silvery flower (diploied) 1	22.072
	CNS0095599	Silvery flower (diploied) 2	138.770
	CNS0095600	Silvery flower (diploied) 3	24.073
	CNS0095601	Golden flower (diploid) 1	185.478
	CNS0095602	Golden flower (diploid) 2	60.637
	CNS0095603	Golden flower (diploid) 3	64.014
	CNS0095604	Slightly white alabastrum(tetraploid) 1	101.426
	CNS0095605	Slightly white alabastrum(tetraploid) 2	118.411
	CNS0095606	Slightly white alabastrum(tetraploid) 3	196.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	154.413
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.795
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.028
	CNS0095610	Silvery flower (tetraploid) 1	88.947
	CNS0095611	Silvery flower (tetraploid) 2	155.493
	CNS0095612	Silvery flower (tetraploid) 3	62.814
	CNS0095613	Golden flower (tetraploid) 1	25.920
	CNS0095614	Golden flower (tetraploid) 2	179.977
	CNS0095615	Golden flower (tetraploid) 3	31.296
CRA001975	CRR073297	Stem 1	2.630
	CRR073298	Stem 2	2.496
	CRR073299	Stem 3	3.868
	CRR073300	Leaf 1	0.074
	CRR073301	Leaf 2	0.354
	CRR073302	Leaf 3	0.391
	CRR073303	Juvenile bud 1	0.167
	CRR073304	Juvenile bud 2	0.056
	CRR073305	Juvenile bud 3	0.595
	CRR073306	Third green 1	0.092
	CRR073307	Third green 2	0.362
	CRR073308	Third green 3	0.237
	CRR073309	Second white 1	4.758
	CRR073310	Second white 2	2.163
	CRR073311	Second white 3	0.370
	CRR073312	Silver flowering 1	0.819
	CRR073313	Silver flowering 2	0.657
	CRR073314	Silver flowering 3	0.676
	CRR073315	Gold flowering 1	44.436
	CRR073316	Gold flowering 2	20.755
	CRR073317	Gold flowering 3	17.524
	CRR073318	Tawny withering 1	2.173
	CRR073319	Tawny withering 2	1.384
	CRR073320	Tawny withering 3	2.477