Detail information of GWHGAAZE006725


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011011531.14.882E-180PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Populus euphratica]
Swissprottr|P27495|CB24_TOBAC5E-178Chlorophyll a-b binding protein 40, chloroplastic (Precursor)
trEMBLtr|M5WUQ0|M5WUQ0_PRUPE5E-180Uncharacterized protein {ECO:0000313|EMBL:EMJ13063.1}
TAIR10AT2G34430.11E-139light-harvesting chlorophyll-protein complex II subunit B1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3095034130951138-
GWHAAZE00000002mRNA3095034130951138-
GWHAAZE00000002exon3095034130951138-
GWHAAZE00000002CDS3095034130951138-
Transcript Sequence

Network for GWHGAAZE006725

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind652313.90E-50
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08912LHCB1 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf831.518
SRR3591706second leaf9115.911
SRR3591707mature leaf5294.589
SRR3591708Shoot apex4187.887
SRR3591709Stem915.117
SRR3591710White floral bud126.344
SRR3591711White flower165.321
SRR3591712Green floral bud128.836
SRR3591713Yellow flower47.366
SRP173429 SRR8316895Juvenile bud stage 450.301
SRR8316896Juvenile bud stage 304.943
SRR8316897Juvenile bud stage 254.390
SRR8316894Third green stage 121.336
SRR8316900Third green stage 149.745
SRR8316901Third green stage 148.642
SRR8316898Complete white stage 34.836
SRR8316899Complete white stage 91.531
SRR8316903Complete white stage 63.069
SRR8316902Silver flowering stage26.516
SRR8316904Silver flowering stage30.104
SRR8316905Silver flowering stage12.668
SRR8316906Gold flowering stage 30.833
SRR8316907Gold flowering stage 31.593
SRR8316908Gold flowering stage 28.192
SRP132670SRR6706286Control452.643
SRR6706287Light intensity 50%322.937
SRR6706288Light intensity 20%298.519
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1641.652
CNS0095593Slightly white alabastrum(diploid) 2468.112
CNS0095594Slightly white alabastrum(diploid) 3454.464
CNS0095595Whole white alabastrum(diploid) 2244.706
CNS0095596Whole white alabastrum(diploid) 3279.123
CNS0095597Whole white alabastrum(diploid) 4150.190
CNS0095598Silvery flower (diploied) 1583.362
CNS0095599Silvery flower (diploied) 2716.349
CNS0095600Silvery flower (diploied) 3222.993
CNS0095601Golden flower (diploid) 1652.617
CNS0095602Golden flower (diploid) 2398.446
CNS0095603Golden flower (diploid) 3402.028
CNS0095604Slightly white alabastrum(tetraploid) 1662.706
CNS0095605Slightly white alabastrum(tetraploid) 2881.457
CNS0095606Slightly white alabastrum(tetraploid) 3961.302
CNS0095607Whole white alabastrum(tetraploid) 1259.144
CNS0095608Whole white alabastrum(tetraploid) 2201.774
CNS0095609Whole white alabastrum(tetraploid) 3290.340
CNS0095610Silvery flower (tetraploid) 1317.514
CNS0095611Silvery flower (tetraploid) 2617.483
CNS0095612Silvery flower (tetraploid) 333.807
CNS0095613Golden flower (tetraploid) 1160.130
CNS0095614Golden flower (tetraploid) 2422.642
CNS0095615Golden flower (tetraploid) 376.444
CRA001975CRR073297Stem 140.207
CRR073298Stem 235.030
CRR073299Stem 387.555
CRR073300Leaf 14.279
CRR073301Leaf 26.066
CRR073302Leaf 39.676
CRR073303Juvenile bud 14.424
CRR073304Juvenile bud 24.907
CRR073305Juvenile bud 35.871
CRR073306Third green 10.437
CRR073307Third green 22.550
CRR073308Third green 36.176
CRR073309Second white 16.653
CRR073310Second white 23.687
CRR073311Second white 30.702
CRR073312Silver flowering 11.270
CRR073313Silver flowering 20.731
CRR073314Silver flowering 32.780
CRR073315Gold flowering 1491.318
CRR073316Gold flowering 2360.194
CRR073317Gold flowering 3457.278
CRR073318Tawny withering 113.657
CRR073319Tawny withering 27.263
CRR073320Tawny withering 312.423