Gene detail

Detail information of GWHGAAZE006726

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011011531.1	1.0655E-179	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Populus euphratica]
Swissprot	tr\|P27493\|CB22_TOBAC	5E-177	Chlorophyll a-b binding protein 21, chloroplastic (Precursor)
trEMBL	tr\|B9I107\|B9I107_POPTR	3E-179	Chlorophyll a-b binding protein 2 {ECO:0000313\|EMBL:EEE97349.1}
TAIR10	AT2G34430.1	2E-130	light-harvesting chlorophyll-protein complex II subunit B1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30952644	30953438	+
GWHAAZE00000002	mRNA	30952644	30953438	+
GWHAAZE00000002	exon	30952644	30953438	+
GWHAAZE00000002	CDS	30952644	30953438	+

Transcript Sequence
>GWHTAAZE006734 ATGGCTGCTTCAACAATGGCTCTCTCTTCCTCATCTTTTGCTGGAAAGGCAGTGAAGCTCACTCCGGCTGCACCAGGGCTCTTTGGCATTTCAAGAGTATCCATGAGAAAAAGCACCAAGCCCGCTGCATCCAGTAGCCCATGGTACGGCCCGGACCGGGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCCCCATCCTACCTTACCGGTGAGTTCCCTGGTGACTACGGGTGGGACACTGCTGGACTTTCAGCTGACCCAGAAACTTTTGCCAAGAACCGTGAGCTCGAGGTGATCCACAGCCGATGGGCCATGCTTGGCGCCCTAGGGTGTGTTTTCCCAGAGCTTTTGTCCCGCAATGGTGTCAAGTTTGGTGAAGCCGTGTGGTTCAAAGCTGGAGCCCAAATCTTCAGCGAGGGAGGGCTTGACTATTTGGGCAACCCAAGCTTGGTCCATGCCCAAAGCATCTTGGCCATATGGGCTACACAAGTTATCTTGATGGGGGCTGTTGAGGGGTACAGGGTTGCCGGTGGGCCCCTTGGGGAGGTGGAGGACCCACTTTACCCAGGAGGAAGCTTTGACCCACTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAGGAGCTAAAGAATGGTAGACTTGCTATGTTTTCCATGTTTGGATTCTTTGTGCAGGCTATCGTGACTGGAAAGGGACCACTGGAGAACCTAGCTGACCATTTAGCTGATCCAGTGAATAACAATGCTTGGGCCTATGCCACTAACTTTGTCCCTGGAAAGTGA

Network for GWHGAAZE006726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	64	230	4.90E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08912	LHCB1	Metabolic pathways	map01100
K08912	LHCB1	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4971.286
	SRR3591706	second leaf	19896.746
	SRR3591707	mature leaf	17445.018
	SRR3591708	Shoot apex	10702.708
	SRR3591709	Stem	5299.123
	SRR3591710	White floral bud	2142.391
	SRR3591711	White flower	1579.873
	SRR3591712	Green floral bud	994.257
	SRR3591713	Yellow flower	747.178
SRP173429	SRR8316895	Juvenile bud stage	1412.226
	SRR8316896	Juvenile bud stage	1205.673
	SRR8316897	Juvenile bud stage	707.324
	SRR8316894	Third green stage	367.170
	SRR8316900	Third green stage	686.380
	SRR8316901	Third green stage	638.277
	SRR8316898	Complete white stage	526.304
	SRR8316899	Complete white stage	994.400
	SRR8316903	Complete white stage	849.698
	SRR8316902	Silver flowering stage	367.917
	SRR8316904	Silver flowering stage	410.765
	SRR8316905	Silver flowering stage	281.012
	SRR8316906	Gold flowering stage	525.900
	SRR8316907	Gold flowering stage	520.764
	SRR8316908	Gold flowering stage	466.932
SRP132670	SRR6706286	Control	1581.076
	SRR6706287	Light intensity 50%	1221.911
	SRR6706288	Light intensity 20%	1207.540
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1886.572
	CNS0095593	Slightly white alabastrum(diploid) 2	1448.456
	CNS0095594	Slightly white alabastrum(diploid) 3	1546.955
	CNS0095595	Whole white alabastrum(diploid) 2	964.194
	CNS0095596	Whole white alabastrum(diploid) 3	867.979
	CNS0095597	Whole white alabastrum(diploid) 4	748.876
	CNS0095598	Silvery flower (diploied) 1	4018.362
	CNS0095599	Silvery flower (diploied) 2	3549.699
	CNS0095600	Silvery flower (diploied) 3	2645.183
	CNS0095601	Golden flower (diploid) 1	3581.863
	CNS0095602	Golden flower (diploid) 2	3096.425
	CNS0095603	Golden flower (diploid) 3	3125.973
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2118.732
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2275.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3421.935
	CNS0095607	Whole white alabastrum(tetraploid) 1	1183.511
	CNS0095608	Whole white alabastrum(tetraploid) 2	952.067
	CNS0095609	Whole white alabastrum(tetraploid) 3	1432.691
	CNS0095610	Silvery flower (tetraploid) 1	4268.722
	CNS0095611	Silvery flower (tetraploid) 2	7755.921
	CNS0095612	Silvery flower (tetraploid) 3	4081.311
	CNS0095613	Golden flower (tetraploid) 1	3827.861
	CNS0095614	Golden flower (tetraploid) 2	5456.838
	CNS0095615	Golden flower (tetraploid) 3	1356.187
CRA001975	CRR073297	Stem 1	514.832
	CRR073298	Stem 2	396.124
	CRR073299	Stem 3	954.541
	CRR073300	Leaf 1	77.835
	CRR073301	Leaf 2	96.124
	CRR073302	Leaf 3	131.914
	CRR073303	Juvenile bud 1	86.001
	CRR073304	Juvenile bud 2	94.851
	CRR073305	Juvenile bud 3	137.183
	CRR073306	Third green 1	82.808
	CRR073307	Third green 2	165.957
	CRR073308	Third green 3	123.341
	CRR073309	Second white 1	1052.948
	CRR073310	Second white 2	374.509
	CRR073311	Second white 3	212.641
	CRR073312	Silver flowering 1	219.391
	CRR073313	Silver flowering 2	237.354
	CRR073314	Silver flowering 3	217.326
	CRR073315	Gold flowering 1	6480.110
	CRR073316	Gold flowering 2	4668.967
	CRR073317	Gold flowering 3	6542.918
	CRR073318	Tawny withering 1	592.646
	CRR073319	Tawny withering 2	346.950
	CRR073320	Tawny withering 3	704.339