Detail information of GWHGAAZE006727


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrF240392.44127E-55chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
Swissprottr|P27490|CB28_PEA1E-42Chlorophyll a-b binding protein 8, chloroplastic (Precursor)
trEMBLtr|Q33516|Q33516_HEDHE5E-41Light harvesting chlorophyll a /b binding protein {ECO:0000313|EMBL:CAA48410.1} (Fragment)
TAIR10AT1G29910.11E-31chlorophyll A/B binding protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3095597930956615+
GWHAAZE00000002mRNA3095597930956615+
GWHAAZE00000002exon3095597930956123+
GWHAAZE00000002exon3095638630956615+
GWHAAZE00000002CDS3095597930956123+
GWHAAZE00000002CDS3095638630956615+
Transcript Sequence

Network for GWHGAAZE006727

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind481241.80E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08912LHCB1 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.971
SRR3591706second leaf28.988
SRR3591707mature leaf24.233
SRR3591708Shoot apex15.194
SRR3591709Stem8.303
SRR3591710White floral bud2.162
SRR3591711White flower0.527
SRR3591712Green floral bud2.380
SRR3591713Yellow flower0.048
SRP173429 SRR8316895Juvenile bud stage 1.860
SRR8316896Juvenile bud stage 2.240
SRR8316897Juvenile bud stage 1.389
SRR8316894Third green stage 0.082
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.018
SRR8316898Complete white stage 0.987
SRR8316899Complete white stage 1.126
SRR8316903Complete white stage 0.024
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.137
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 1.033
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 1.053
SRP132670SRR6706286Control0.012
SRR6706287Light intensity 50%0.040
SRR6706288Light intensity 20%0.160
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.917
CNS0095593Slightly white alabastrum(diploid) 20.560
CNS0095594Slightly white alabastrum(diploid) 35.211
CNS0095595Whole white alabastrum(diploid) 20.251
CNS0095596Whole white alabastrum(diploid) 30.167
CNS0095597Whole white alabastrum(diploid) 40.021
CNS0095598Silvery flower (diploied) 18.062
CNS0095599Silvery flower (diploied) 28.278
CNS0095600Silvery flower (diploied) 33.592
CNS0095601Golden flower (diploid) 10.202
CNS0095602Golden flower (diploid) 23.445
CNS0095603Golden flower (diploid) 33.248
CNS0095604Slightly white alabastrum(tetraploid) 13.326
CNS0095605Slightly white alabastrum(tetraploid) 26.727
CNS0095606Slightly white alabastrum(tetraploid) 30.556
CNS0095607Whole white alabastrum(tetraploid) 10.317
CNS0095608Whole white alabastrum(tetraploid) 20.879
CNS0095609Whole white alabastrum(tetraploid) 32.590
CNS0095610Silvery flower (tetraploid) 16.845
CNS0095611Silvery flower (tetraploid) 29.844
CNS0095612Silvery flower (tetraploid) 36.074
CNS0095613Golden flower (tetraploid) 17.834
CNS0095614Golden flower (tetraploid) 216.787
CNS0095615Golden flower (tetraploid) 32.639
CRA001975CRR073297Stem 10.071
CRR073298Stem 20.125
CRR073299Stem 30.642
CRR073300Leaf 10.066
CRR073301Leaf 20.110
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.047
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.011
CRR073307Third green 20.006
CRR073308Third green 30.000
CRR073309Second white 11.449
CRR073310Second white 20.023
CRR073311Second white 30.000
CRR073312Silver flowering 10.011
CRR073313Silver flowering 20.169
CRR073314Silver flowering 30.000
CRR073315Gold flowering 18.935
CRR073316Gold flowering 22.567
CRR073317Gold flowering 35.381
CRR073318Tawny withering 10.038
CRR073319Tawny withering 20.217
CRR073320Tawny withering 30.069