Gene detail

Detail information of GWHGAAZE006746

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004485968.1	5.52614E-70	PREDICTED: eukaryotic translation initiation factor 4E-1-like [Cicer arietinum]
Swissprot	tr\|O81481\|IF4E1_MAIZE	2E-60	Eukaryotic translation initiation factor 4E-1
trEMBL	tr\|A0A067JEI4\|A0A067JEI4_JATCU	2E-67	Uncharacterized protein {ECO:0000313\|EMBL:KDP21178.1}
TAIR10	AT4G18040.1	6E-48	eukaryotic translation initiation factor 4E

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	31225343	31229590	+
GWHAAZE00000002	mRNA	31225343	31229590	+
GWHAAZE00000002	exon	31225343	31225626	+
GWHAAZE00000002	exon	31226027	31226135	+
GWHAAZE00000002	exon	31228156	31228278	+
GWHAAZE00000002	exon	31229356	31229421	+
GWHAAZE00000002	exon	31229537	31229590	+
GWHAAZE00000002	CDS	31225343	31225626	+
GWHAAZE00000002	CDS	31226027	31226135	+
GWHAAZE00000002	CDS	31228156	31228278	+
GWHAAZE00000002	CDS	31229356	31229421	+
GWHAAZE00000002	CDS	31229537	31229590	+

Transcript Sequence
>GWHTAAZE006754 ATGGCGGAAGAGGTAGAGAAATCGTCAATAACATCTGAGGAACAGAGCGAGAACATTAAATCTAGGGTTAGAGGTGAGAACAACGAACAAGAAGACCTAGAGGAAGGAGAGATCATTAACGATGATGATGACGCTGCGTCATCGGCTAAGGCGATCGTAAACCATCCATTGGAGCACTCTTGGACTTTCTGGTTCGATAATGCCTCAGCCAAGTCCAAACAAGCTGCTTGGGGTAGTTCTATGCGTACTATCTACACCTTCTCCACTGTCGAAGAATTCTGGAGGTTTAGAGTAGATGCGAAGCGAAAAGAAGCGTGTAATTTTGTGAGTCATCTATTTGTTGTGTATTTCAGTTTGGTTTCCAAGAAAATTCAAGAAGCATATCTGGAGATGTTGCTGGCAATGATCGGAGAACAGTTTACTCATGGAGATGAAATCTGTGGAGCAGTTGTCAATGTCAGAGCTAAACTGAAAATTTCATTGTGGACCAAGAATGCGGCAAATGAAAGTGCACAGGTTAGCATTGCAAAACAGTGGAAGGAATTCCTTGACTACAGTGACATCATAGGGTTCATATTTCATGAGGATGCAATGAAGCAAGACAGAGGAGCAGCAAGGAATAAATACACTGTATGA

Network for GWHGAAZE006746

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01652.19	IF4E	56	105	5.10E-09
PF01652.19	IF4E	121	186	1.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03259	EIF4E	RNA transport	map03013
		HIF-1 signaling pathway	map04066
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Insulin signaling pathway	map04910
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0003723	molecular_function	RNA binding
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.936
	SRR3591706	second leaf	41.214
	SRR3591707	mature leaf	30.087
	SRR3591708	Shoot apex	75.059
	SRR3591709	Stem	52.802
	SRR3591710	White floral bud	73.427
	SRR3591711	White flower	77.464
	SRR3591712	Green floral bud	78.241
	SRR3591713	Yellow flower	74.179
SRP173429	SRR8316895	Juvenile bud stage	54.354
	SRR8316896	Juvenile bud stage	61.049
	SRR8316897	Juvenile bud stage	35.790
	SRR8316894	Third green stage	25.963
	SRR8316900	Third green stage	73.731
	SRR8316901	Third green stage	76.234
	SRR8316898	Complete white stage	33.378
	SRR8316899	Complete white stage	72.529
	SRR8316903	Complete white stage	46.829
	SRR8316902	Silver flowering stage	33.654
	SRR8316904	Silver flowering stage	40.487
	SRR8316905	Silver flowering stage	19.817
	SRR8316906	Gold flowering stage	60.328
	SRR8316907	Gold flowering stage	71.042
	SRR8316908	Gold flowering stage	68.415
SRP132670	SRR6706286	Control	57.691
	SRR6706287	Light intensity 50%	60.432
	SRR6706288	Light intensity 20%	66.113
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.558
	CNS0095593	Slightly white alabastrum(diploid) 2	44.979
	CNS0095594	Slightly white alabastrum(diploid) 3	51.519
	CNS0095595	Whole white alabastrum(diploid) 2	41.743
	CNS0095596	Whole white alabastrum(diploid) 3	39.414
	CNS0095597	Whole white alabastrum(diploid) 4	33.907
	CNS0095598	Silvery flower (diploied) 1	42.518
	CNS0095599	Silvery flower (diploied) 2	31.806
	CNS0095600	Silvery flower (diploied) 3	55.324
	CNS0095601	Golden flower (diploid) 1	35.728
	CNS0095602	Golden flower (diploid) 2	50.195
	CNS0095603	Golden flower (diploid) 3	53.944
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.800
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.109
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.586
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.356
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.390
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.424
	CNS0095610	Silvery flower (tetraploid) 1	60.589
	CNS0095611	Silvery flower (tetraploid) 2	50.066
	CNS0095612	Silvery flower (tetraploid) 3	52.903
	CNS0095613	Golden flower (tetraploid) 1	53.929
	CNS0095614	Golden flower (tetraploid) 2	55.797
	CNS0095615	Golden flower (tetraploid) 3	41.408
CRA001975	CRR073297	Stem 1	43.859
	CRR073298	Stem 2	45.521
	CRR073299	Stem 3	49.651
	CRR073300	Leaf 1	37.655
	CRR073301	Leaf 2	37.755
	CRR073302	Leaf 3	45.047
	CRR073303	Juvenile bud 1	37.644
	CRR073304	Juvenile bud 2	32.760
	CRR073305	Juvenile bud 3	32.620
	CRR073306	Third green 1	34.323
	CRR073307	Third green 2	36.609
	CRR073308	Third green 3	34.448
	CRR073309	Second white 1	23.356
	CRR073310	Second white 2	37.269
	CRR073311	Second white 3	29.143
	CRR073312	Silver flowering 1	26.024
	CRR073313	Silver flowering 2	22.841
	CRR073314	Silver flowering 3	31.037
	CRR073315	Gold flowering 1	27.532
	CRR073316	Gold flowering 2	26.513
	CRR073317	Gold flowering 3	15.578
	CRR073318	Tawny withering 1	35.523
	CRR073319	Tawny withering 2	36.200
	CRR073320	Tawny withering 3	41.967