Gene detail

Detail information of GWHGAAZE006766

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU28128.1	1.3325E-140	hypothetical protein MIMGU_mgv1a011383mg [Erythranthe guttata]
Swissprot	tr\|Q8LFP7\|NIP12_ARATH	1E-113	Aquaporin NIP1-2, N-terminally processed
trEMBL	tr\|A0A022QLH6\|A0A022QLH6_ERYGU	5E-141	Uncharacterized protein {ECO:0000313\|EMBL:EYU28128.1}
TAIR10	AT4G18910.1	9E-76	NOD26-like intrinsic protein 1;2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	31595243	31598591	-
GWHAAZE00000002	mRNA	31595243	31598591	-
GWHAAZE00000002	exon	31598466	31598591	-
GWHAAZE00000002	exon	31597123	31597347	-
GWHAAZE00000002	exon	31596281	31596409	-
GWHAAZE00000002	exon	31595721	31595782	-
GWHAAZE00000002	exon	31595243	31595631	-
GWHAAZE00000002	CDS	31598466	31598591	-
GWHAAZE00000002	CDS	31597123	31597347	-
GWHAAZE00000002	CDS	31596281	31596409	-
GWHAAZE00000002	CDS	31595721	31595782	-
GWHAAZE00000002	CDS	31595415	31595631	-
GWHAAZE00000002	three_prime_UTR	31595243	31595414	-

Transcript Sequence
>GWHTAAZE006774 ATGGCAGAGACAATAGGAGGAGGGGCTAATGGCAACCATGCAGTTTCTTTGGATATAAAAGATGGCTCTATGCCCAATACAAATGAACACTCAAGCTTCCTTTTCACTCTCCCTTTTGTACAAAAGTTGATCGCAGAGGTGTTTGGCACGTACTTCTTGATATTCGCGGGATGTGCGGCGGTGGTGGTGAACTCTGATAAGGACAAGGTGGTGAGCCTGCCGGGAATATCAATAGTATGGGGGCTGGCGGTGATGGTAATGGTTTACTCTGTTGGCCATATTTCTGGTGCCCATTTTAACCCCGCTGTCACCATTGCTTTTGCTACATGCAAGAGGTTCCCATGGAAACAGGTACCTGCCTATATTGCAGCTCAAGTCCTTGGATCAACCCTAGCTAGTGGGACCCTCCGGCTACTATTTAACGGCAAGCAAGATCATTTCGCCGGCACTCTTCCCGCTGGCTCTGATGTCCAATCTCTCATAGGAGAACTTGCTGGTCTTGCCGTTGGAGCTACCGTTTTACTTAATGTGATGTTTGCCGGACCAATATCAGGGGCATCAATGAACCCAGCAAGGAGTTTGGGGCCAGCAATTGTGTCAAACCAATACAAGGGGCTGTGGATATACATAGTGGGTCCAATCTGTGGAGCCATTGCAGGTGCCTGGGTCTATAATCTCATCAGGTTCACTAACAAGCCCCTGCGTGAAATCACCAAAAGTGCCTCTTTCCTAAGGGCTGCTCGAAATGGCTCTACCTGAGAAAAAACTAGTTTGTATTTTCTACTTTTTATGTGCAAAATTTGTATCAAACCATAAAAAGAAAAAGAAAGGCTTTTATTGCTTTATATTTTATCTAGTAAAAGATGGAAGTCTAGATTCTAATCCATTTGGAAACACACACCAAGAAGGCGAAGTACACAATTCATGAAAA

Network for GWHGAAZE006766

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0264

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00230.21	MIP	37	149	7.20E-31
PF00230.21	MIP	160	224	6.80E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0015267	molecular_function	channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.766
	SRR3591706	second leaf	39.409
	SRR3591707	mature leaf	4.564
	SRR3591708	Shoot apex	38.363
	SRR3591709	Stem	2.228
	SRR3591710	White floral bud	2.174
	SRR3591711	White flower	1.379
	SRR3591712	Green floral bud	3.596
	SRR3591713	Yellow flower	4.601
SRP173429	SRR8316895	Juvenile bud stage	7.773
	SRR8316896	Juvenile bud stage	11.198
	SRR8316897	Juvenile bud stage	4.168
	SRR8316894	Third green stage	1.940
	SRR8316900	Third green stage	4.329
	SRR8316901	Third green stage	5.965
	SRR8316898	Complete white stage	0.842
	SRR8316899	Complete white stage	5.442
	SRR8316903	Complete white stage	1.190
	SRR8316902	Silver flowering stage	1.241
	SRR8316904	Silver flowering stage	1.443
	SRR8316905	Silver flowering stage	0.671
	SRR8316906	Gold flowering stage	2.794
	SRR8316907	Gold flowering stage	1.340
	SRR8316908	Gold flowering stage	5.661
SRP132670	SRR6706286	Control	3.969
	SRR6706287	Light intensity 50%	3.271
	SRR6706288	Light intensity 20%	3.267
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.179
	CNS0095593	Slightly white alabastrum(diploid) 2	5.188
	CNS0095594	Slightly white alabastrum(diploid) 3	5.113
	CNS0095595	Whole white alabastrum(diploid) 2	3.153
	CNS0095596	Whole white alabastrum(diploid) 3	1.051
	CNS0095597	Whole white alabastrum(diploid) 4	4.200
	CNS0095598	Silvery flower (diploied) 1	2.150
	CNS0095599	Silvery flower (diploied) 2	2.197
	CNS0095600	Silvery flower (diploied) 3	2.318
	CNS0095601	Golden flower (diploid) 1	0.564
	CNS0095602	Golden flower (diploid) 2	1.373
	CNS0095603	Golden flower (diploid) 3	1.912
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.259
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.730
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.086
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.400
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.903
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.435
	CNS0095610	Silvery flower (tetraploid) 1	1.648
	CNS0095611	Silvery flower (tetraploid) 2	0.926
	CNS0095612	Silvery flower (tetraploid) 3	1.734
	CNS0095613	Golden flower (tetraploid) 1	1.492
	CNS0095614	Golden flower (tetraploid) 2	1.730
	CNS0095615	Golden flower (tetraploid) 3	0.880
CRA001975	CRR073297	Stem 1	14.162
	CRR073298	Stem 2	14.793
	CRR073299	Stem 3	7.385
	CRR073300	Leaf 1	4.586
	CRR073301	Leaf 2	5.903
	CRR073302	Leaf 3	3.353
	CRR073303	Juvenile bud 1	1.967
	CRR073304	Juvenile bud 2	0.373
	CRR073305	Juvenile bud 3	1.845
	CRR073306	Third green 1	0.189
	CRR073307	Third green 2	0.161
	CRR073308	Third green 3	0.207
	CRR073309	Second white 1	0.221
	CRR073310	Second white 2	0.594
	CRR073311	Second white 3	0.262
	CRR073312	Silver flowering 1	1.363
	CRR073313	Silver flowering 2	1.957
	CRR073314	Silver flowering 3	0.422
	CRR073315	Gold flowering 1	5.542
	CRR073316	Gold flowering 2	2.074
	CRR073317	Gold flowering 3	5.382
	CRR073318	Tawny withering 1	28.489
	CRR073319	Tawny withering 2	15.709
	CRR073320	Tawny withering 3	26.038