Gene detail

Detail information of GWHGAAZE006776

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP06028.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|P38379\|SC61A_PYRSA	Protein transport protein Sec61 subunit alpha
trEMBL	tr\|A0A068UEG9\|A0A068UEG9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP06028.1}
TAIR10	AT2G34250.2	SecY protein transport family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	31762791	31766447	+
GWHAAZE00000002	mRNA	31762791	31766447	+
GWHAAZE00000002	exon	31762791	31763134	+
GWHAAZE00000002	exon	31763864	31764091	+
GWHAAZE00000002	exon	31764189	31764543	+
GWHAAZE00000002	exon	31764951	31765075	+
GWHAAZE00000002	exon	31765615	31765750	+
GWHAAZE00000002	exon	31766208	31766447	+
GWHAAZE00000002	CDS	31762791	31763134	+
GWHAAZE00000002	CDS	31763864	31764091	+
GWHAAZE00000002	CDS	31764189	31764543	+
GWHAAZE00000002	CDS	31764951	31765075	+
GWHAAZE00000002	CDS	31765615	31765750	+
GWHAAZE00000002	CDS	31766208	31766447	+

Transcript Sequence
>GWHTAAZE006784 ATGGGAGGAGGTTTCAGGGTGCTGCATTTGGTCAGACCCTTTCTTTCATTTCTGCCGGAAGTTCAGAGTGCTGACCGGAAGGTTCCATTCAGAGAGAAGGTCATATACACTGTGATCTCTCTTTTCATCTTCTTGGTGTGCAGTCAGCTCCCTCTGTATGGGATACATTCTACGACAGGTGCAGACCCTTTCTATTGGATGCGTGTGATTCTTGCCTCGAATCGTGGGACTGTCATGGAGCTGGGAATTACACCCATTGTGACATCTGGTCTGGTAATGCAGCTTTTGGCTGGATCAAAGATTATTGAAGTGGACAACAATGTTCGTGAGGATCGCGCCCTCTTAAACGGTGCCCAGAAATTACTGGGGATACTGATTGCGGTAGGCGAAGCTGTTGCTTATGTTCTGTCAGGAATGTACGGTAGTGTTGGCCAACTTGGTGTTGGTAATGCTATTCTCATAATTGTTCAACTTTGCTTTGCTGGAATCATTGTTATTTGCTTAGACGAACTTCTTCAGAAGGGATATGGTCTAGGCTCTGGGATTTCCTTGTTTATAGCTACCAATATCTGTGAAAGCATTATCTGGAAAGCATTTAGCCCCACAACAATCAACAGTGGAAGAGGTGCTGAATTTGAAGGTGCTGTTATTGCCTTGTTCCATCTGCTGATCACTCGGACAGACAAAGTTCGTGCTCTCCGTGAAGCTTTCTACCGGCAGAATCTTCCAAATGTTACAAATTTGCTTGCTACTGTCTTGATCTTCCTTATTGTTATCTACTTCCAAGGTTTTCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAACAGGGTTCTTATCCAATAAAGCTATTCTATACTTCCAACATGCCTATCATTCTTCAATCTGCACTTGTATCCAACCTTTATTTCATCTCTCAGTTGCTTCACAGGAGATACAGCGGAAACTTCCTTGTGAATTTGTTGGGCAAGTGGAAGGAATCTGAATATTCAGGTCAATCTATCCCAGTTGGTGGTCTCGCTTACTATGTAACTGCACCATCAAGCTTGGCAGATATGGCAGCCAATCCCTTCCATGCTCTTTTCTATTTAGTGTTTATGCTATCAGCTTGTGCGCTATTCTCAAAAACTTGGATTGAAGTTTCTGGCTCTTCTGCTAGAGACGTGGCCAAGCAGCTTAAGGAGCAACAAATGGTGATGCCTGGGCATCGGGATTCAAATCTCCAGAAGGAACTGAACAGATACATACCCACTGCGGCTGCCTTTGGCGGAGTATGCATTGGCGCTTTGACAGTGTTGGCAGACTTTATGGGAGCCATTGGATCGGGAACTGGAATTCTACTTGCGGTCACAATCATTTATCAGTACTTTGAGACCTTTGAGAAGGAGAAGGCCAGTGAACTGGGTTTATTCGGCTTTTAA

Network for GWHGAAZE006776

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0189

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10559.10	Plug_translocon	42	76	6.30E-18
PF00344.21	SecY	77	458	3.40E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10956	SEC61A	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	152.094
	SRR3591706	second leaf	86.908
	SRR3591707	mature leaf	72.335
	SRR3591708	Shoot apex	111.246
	SRR3591709	Stem	94.513
	SRR3591710	White floral bud	110.468
	SRR3591711	White flower	112.248
	SRR3591712	Green floral bud	148.383
	SRR3591713	Yellow flower	155.862
SRP173429	SRR8316895	Juvenile bud stage	94.164
	SRR8316896	Juvenile bud stage	118.769
	SRR8316897	Juvenile bud stage	76.527
	SRR8316894	Third green stage	53.926
	SRR8316900	Third green stage	169.310
	SRR8316901	Third green stage	143.619
	SRR8316898	Complete white stage	75.145
	SRR8316899	Complete white stage	179.443
	SRR8316903	Complete white stage	98.560
	SRR8316902	Silver flowering stage	75.821
	SRR8316904	Silver flowering stage	101.197
	SRR8316905	Silver flowering stage	47.123
	SRR8316906	Gold flowering stage	158.185
	SRR8316907	Gold flowering stage	147.030
	SRR8316908	Gold flowering stage	169.709
SRP132670	SRR6706286	Control	96.387
	SRR6706287	Light intensity 50%	100.815
	SRR6706288	Light intensity 20%	107.608
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	131.284
	CNS0095593	Slightly white alabastrum(diploid) 2	130.798
	CNS0095594	Slightly white alabastrum(diploid) 3	118.593
	CNS0095595	Whole white alabastrum(diploid) 2	110.786
	CNS0095596	Whole white alabastrum(diploid) 3	113.334
	CNS0095597	Whole white alabastrum(diploid) 4	94.008
	CNS0095598	Silvery flower (diploied) 1	109.827
	CNS0095599	Silvery flower (diploied) 2	89.583
	CNS0095600	Silvery flower (diploied) 3	160.768
	CNS0095601	Golden flower (diploid) 1	78.631
	CNS0095602	Golden flower (diploid) 2	202.786
	CNS0095603	Golden flower (diploid) 3	190.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	131.663
	CNS0095605	Slightly white alabastrum(tetraploid) 2	119.933
	CNS0095606	Slightly white alabastrum(tetraploid) 3	177.802
	CNS0095607	Whole white alabastrum(tetraploid) 1	86.100
	CNS0095608	Whole white alabastrum(tetraploid) 2	68.820
	CNS0095609	Whole white alabastrum(tetraploid) 3	159.331
	CNS0095610	Silvery flower (tetraploid) 1	141.693
	CNS0095611	Silvery flower (tetraploid) 2	117.658
	CNS0095612	Silvery flower (tetraploid) 3	122.482
	CNS0095613	Golden flower (tetraploid) 1	75.654
	CNS0095614	Golden flower (tetraploid) 2	128.450
	CNS0095615	Golden flower (tetraploid) 3	161.236
CRA001975	CRR073297	Stem 1	129.736
	CRR073298	Stem 2	118.991
	CRR073299	Stem 3	167.140
	CRR073300	Leaf 1	132.372
	CRR073301	Leaf 2	130.642
	CRR073302	Leaf 3	180.768
	CRR073303	Juvenile bud 1	173.809
	CRR073304	Juvenile bud 2	175.777
	CRR073305	Juvenile bud 3	183.107
	CRR073306	Third green 1	107.937
	CRR073307	Third green 2	86.804
	CRR073308	Third green 3	104.880
	CRR073309	Second white 1	172.891
	CRR073310	Second white 2	124.248
	CRR073311	Second white 3	140.978
	CRR073312	Silver flowering 1	261.199
	CRR073313	Silver flowering 2	353.398
	CRR073314	Silver flowering 3	317.656
	CRR073315	Gold flowering 1	66.301
	CRR073316	Gold flowering 2	76.375
	CRR073317	Gold flowering 3	87.986
	CRR073318	Tawny withering 1	128.401
	CRR073319	Tawny withering 2	119.097
	CRR073320	Tawny withering 3	139.669