Gene detail

Detail information of GWHGAAZE006777

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP06028.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|P38379\|SC61A_PYRSA	Protein transport protein Sec61 subunit alpha
trEMBL	tr\|A0A068UEG9\|A0A068UEG9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP06028.1}
TAIR10	AT2G34250.2	SecY protein transport family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	31780661	31785377	+
GWHAAZE00000002	mRNA	31780661	31785377	+
GWHAAZE00000002	exon	31780661	31781004	+
GWHAAZE00000002	exon	31782476	31782703	+
GWHAAZE00000002	exon	31782802	31783156	+
GWHAAZE00000002	exon	31783788	31783912	+
GWHAAZE00000002	exon	31784273	31784408	+
GWHAAZE00000002	exon	31785138	31785377	+
GWHAAZE00000002	CDS	31780661	31781004	+
GWHAAZE00000002	CDS	31782476	31782703	+
GWHAAZE00000002	CDS	31782802	31783156	+
GWHAAZE00000002	CDS	31783788	31783912	+
GWHAAZE00000002	CDS	31784273	31784408	+
GWHAAZE00000002	CDS	31785138	31785377	+

Transcript Sequence
>GWHTAAZE006785 ATGGGAGGAGGTTTCAGGGTCCTGCATTTGGTCAGACCCTTTCTTTCATTTCTGCCGGAAGTTCAGAGTGCTGACCGGAAGGTTCCATTCAGAGAGAAGGTCATATACACTGTGATCTCTCTTTTCATTTTCTTGGTGTGCAGTCAGCTCCCTCTGTATGGGATACATTCTACGACAGGTGCAGACCCTTTCTATTGGATGCGTGTGATTCTTGCCTCGAATCGTGGGACTGTCATGGAGCTGGGAATTACACCCATTGTGACATCTGGTCTGGTAATGCAGCTTTTGGCTGGGTCAAAGATTATTGAAGTGGACAACAATGTTCGTGAGGATCGCGCCCTCTTAAATGGTGCCCAGAAATTACTGGGGATATTGATTGCTGTAGGCGAAGCTGTTGCTTATGTTCTGTCAGGAATGTATGGCAGTGTTGGCCAACTCGGTGTTGGTAATGCTATTCTCATAATTGTTCAACTTTGCTTTGCTGGAATCATTGTTATTTGCTTAGACGAACTTCTTCAGAAGGGATATGGTCTAGGTTCTGGGATTTCCTTGTTTATAGCTACCAATATCTGTGAAAGCATTATCTGGAAGGCATTTAGTCCCACAACAATCAATAGTGGAAGAGGTGCTGAATTTGAAGGTGCTGTTATTGCCTTGTTCCATCTGCTGATAACTCGGACAGACAAAGTTCGTGCTCTCCGTGAAGCTTTCTACCGGCAGAATCTTCCAAATGTTACAAATTTGCTTGCTACTGTCTTGATCTTTCTTATTGTTATCTACTTCCAAGGTTTTCGTGTGGTTTTGCCAGTGAGATCAAAGAATGCCCGTGGACAACAGGGTTCTTATCCAATAAAGCTATTCTACACTTCCAACATGCCTATCATTCTTCAGTCTGCACTTGTATCCAACCTTTATTTCATCTCTCAGTTGCTGCACAGGAGATACAGTGGAAACTTTCTTGTAAATTTGTTGGGCAAGTGGAAGGAATCTGAATATTCGGGTCAATCTATCCCAGTTGGTGGTCTTGCTTACTATGTAACTGCACCATCAAGCTTGGCAGATATGGCTGCCAATCCCTTCCACGCTCTTTTCTATTTAGTGTTTATGCTATCAGCTTGTGCGCTATTCTCAAAAACTTGGATCGAAGTTTCTGGCTCTTCTGCTAGAGATGTGGCCAAGCAGCTGAAGGAGCAACAAATGGTGATGCCTGGGCATCGGGATTCAAATCTTCAGAAGGAACTGAACCGATACATACCCACAGCAGCTGCCTTTGGAGGAGTATGCATTGGAGCATTGACAGTGTTGGCGGACTTCATGGGAGCCATTGGATCGGGAACTGGAATTCTGCTTGCAGTCACGATCATTTATCAGTACTTTGAGACCTTTGAGAAGGAGAAGGCCAGTGAACTGGGTTTATTTGGCTTTTAA

Network for GWHGAAZE006777

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10559.10	Plug_translocon	42	76	6.30E-18
PF00344.21	SecY	77	458	3.40E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10956	SEC61A	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.935
	SRR3591706	second leaf	37.333
	SRR3591707	mature leaf	27.387
	SRR3591708	Shoot apex	51.951
	SRR3591709	Stem	46.894
	SRR3591710	White floral bud	50.330
	SRR3591711	White flower	55.767
	SRR3591712	Green floral bud	72.416
	SRR3591713	Yellow flower	48.408
SRP173429	SRR8316895	Juvenile bud stage	38.751
	SRR8316896	Juvenile bud stage	59.062
	SRR8316897	Juvenile bud stage	30.542
	SRR8316894	Third green stage	25.011
	SRR8316900	Third green stage	65.701
	SRR8316901	Third green stage	59.264
	SRR8316898	Complete white stage	24.664
	SRR8316899	Complete white stage	70.733
	SRR8316903	Complete white stage	39.545
	SRR8316902	Silver flowering stage	25.024
	SRR8316904	Silver flowering stage	37.822
	SRR8316905	Silver flowering stage	16.059
	SRR8316906	Gold flowering stage	54.805
	SRR8316907	Gold flowering stage	49.984
	SRR8316908	Gold flowering stage	59.078
SRP132670	SRR6706286	Control	34.303
	SRR6706287	Light intensity 50%	35.540
	SRR6706288	Light intensity 20%	41.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.877
	CNS0095593	Slightly white alabastrum(diploid) 2	45.704
	CNS0095594	Slightly white alabastrum(diploid) 3	50.778
	CNS0095595	Whole white alabastrum(diploid) 2	43.510
	CNS0095596	Whole white alabastrum(diploid) 3	38.367
	CNS0095597	Whole white alabastrum(diploid) 4	32.684
	CNS0095598	Silvery flower (diploied) 1	29.923
	CNS0095599	Silvery flower (diploied) 2	31.074
	CNS0095600	Silvery flower (diploied) 3	62.008
	CNS0095601	Golden flower (diploid) 1	20.001
	CNS0095602	Golden flower (diploid) 2	57.578
	CNS0095603	Golden flower (diploid) 3	54.197
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.611
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.771
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.521
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.274
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.983
	CNS0095610	Silvery flower (tetraploid) 1	48.380
	CNS0095611	Silvery flower (tetraploid) 2	49.462
	CNS0095612	Silvery flower (tetraploid) 3	46.997
	CNS0095613	Golden flower (tetraploid) 1	25.037
	CNS0095614	Golden flower (tetraploid) 2	48.123
	CNS0095615	Golden flower (tetraploid) 3	44.161
CRA001975	CRR073297	Stem 1	57.922
	CRR073298	Stem 2	52.085
	CRR073299	Stem 3	60.128
	CRR073300	Leaf 1	60.871
	CRR073301	Leaf 2	55.993
	CRR073302	Leaf 3	65.755
	CRR073303	Juvenile bud 1	62.541
	CRR073304	Juvenile bud 2	47.580
	CRR073305	Juvenile bud 3	69.139
	CRR073306	Third green 1	38.061
	CRR073307	Third green 2	32.578
	CRR073308	Third green 3	40.121
	CRR073309	Second white 1	53.668
	CRR073310	Second white 2	46.823
	CRR073311	Second white 3	53.304
	CRR073312	Silver flowering 1	54.779
	CRR073313	Silver flowering 2	62.207
	CRR073314	Silver flowering 3	56.177
	CRR073315	Gold flowering 1	24.646
	CRR073316	Gold flowering 2	32.117
	CRR073317	Gold flowering 3	25.081
	CRR073318	Tawny withering 1	60.789
	CRR073319	Tawny withering 2	51.484
	CRR073320	Tawny withering 3	58.023