Gene detail

Detail information of GWHGAAZE006789

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009775369.1	PREDICTED: ornithine aminotransferase, mitochondrial [Nicotiana sylvestris]
Swissprot	tr\|Q9FNK4\|OAT_ARATH	Ornithine aminotransferase, mitochondrial (Precursor)
trEMBL	tr\|E1AWW9\|E1AWW9_TOBAC	Ornithine aminotransferase {ECO:0000313\|EMBL:ADM47437.1}
TAIR10	AT5G46180.1	ornithine-delta-aminotransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32051899	32060220	+
GWHAAZE00000002	mRNA	32051899	32060220	+
GWHAAZE00000002	exon	32051899	32052236	+
GWHAAZE00000002	exon	32052877	32052985	+
GWHAAZE00000002	exon	32053674	32053904	+
GWHAAZE00000002	exon	32055344	32055503	+
GWHAAZE00000002	exon	32055706	32055761	+
GWHAAZE00000002	exon	32056165	32056317	+
GWHAAZE00000002	exon	32056887	32056984	+
GWHAAZE00000002	exon	32058216	32058296	+
GWHAAZE00000002	exon	32058809	32059042	+
GWHAAZE00000002	exon	32059921	32060220	+
GWHAAZE00000002	five_prime_UTR	32051899	32052087	+
GWHAAZE00000002	CDS	32052088	32052236	+
GWHAAZE00000002	CDS	32052877	32052985	+
GWHAAZE00000002	CDS	32053674	32053904	+
GWHAAZE00000002	CDS	32055344	32055503	+
GWHAAZE00000002	CDS	32055706	32055761	+
GWHAAZE00000002	CDS	32056165	32056317	+
GWHAAZE00000002	CDS	32056887	32056984	+
GWHAAZE00000002	CDS	32058216	32058296	+
GWHAAZE00000002	CDS	32058809	32059042	+
GWHAAZE00000002	CDS	32059921	32060068	+
GWHAAZE00000002	three_prime_UTR	32060069	32060220	+

Transcript Sequence
>GWHTAAZE006797 ATGTGTCTCCCTCACTCAGTCGCTTCAACGCACTCAAAATTCTGATATTAGAGAGAGAGAGGGAGAGAGCTGTTAAGGAATAAATTCCACAAAGTGATGTTCTTTGATTGGTTTCGGCCTTATTAGTGATCGAATTGAAGAAATATAATCCGTGGGGGTTTGGGGTTGTATTAATTTCATTTAGCATCAATGGCATCGAGGAGGAGATGTCTGCAGTTTGTATTGAATAGAATTTGCAAGGGAAGTAGTCGTAATTTTGGAGCTCTACCTCAGGGCACCACCAATCCTTCCTCTTCTCAACGTCTCATCACTTTAGAATATGAATGCAGCGCCCACAATTACCACCCAATTCCCATCGTATTTTCCCAAGCAAAGGGATCATCTATATGGGATCCAGAAGGCAACAAATATCTCGACTTCCTCTCGGCTTACTCTGCAGTTAATCAGGGGCATTGTCATCCAAAGGTCATGAAAGCATTAGTAGAGCAGGCAGAAAGGCTCACTCTAAGCTCTAGAGCGTTCTACAACGACAAATTTCCAATATTTGCCGAGTTTCTAACAAGCATATTTGGATATGATATGGTGCTACCAATGAATACTGGAGCTGAAGGCGTGGAAACGGCTCTAAAGTTGGCTAGGAAATGGGGTTATGAGAAGAAAAAGATCCCCAAAGATGAGGCTATCATTGTCTCATGTTGTGGGTGCTTTCACGGTCGTACAGTAGCTGCTATTTCAATGAGTTGTGACAACGACGCCACTCGTGGTTTTTGGCCATTGCTGCCTGGCCAACTCAAAGTTGATTTTGGTGATGAAGCTGCTCTTGAGAAAATATTTAGAGAAAAAGGAGATAAGATAGCTGGTTTTCTGTTTGAACCCATTCAAGGAGAGGCTGGGGTTGTAATTCCTCCAGATGGTTACCTAAAAGCTGTAAGAGATCTTTGCTCAAAATATAATATCTTGATGATTGCTGATGAAATCCAAAGTGGCTTAGCAAGGTCAGGACGAATGCTGGCTTGTGACTGGGAAGTAGTCCGTCCTGATGTTGTGATACTGGGAAAAGCATTAGGTGGTGGAGTGATACCTGTAAGTGCAGTTCTAGCCGACAAAGATATTATGCTTTGTATACAGCCAGGAGAGCATGGAAGCACCTTTGGGGGAAACCCTCTGGCCAGTGCAGTTGCCATAGCATCATTAGAGGTGATCAGGGATGAGGGACTCGCCGAGAGATCTGATCAAATGGGACAGGAGCTTAGGCATCAGCTAGTGAAGATTCAAGAGAAATTTCCCAACATAATAAAGGAAGTTCGAGGGAAAGGTTTATTCAATGCCGTGGAGCTTAATAGCAAGGCTTTATTCCCCGTGTCTGCTTATGATTTATGTCTCAAGTTGAAGGATAGAGGAATTCTCGCTAAACCTACTCATGATTCTATCATCCGATTAACTCCTCCCCTCTCCATGAGCGCGGATGAGATAAAAGAAGGATCGAAGGCGCTACACGACGTTATAGAACTTGACGTACCAAAGATGCAGAAGGAGAAAGCAGACACAGTATCATCCCCTAAAACTACTACTGTATGTGACCGATGCGGGCGCAACTTGTATCACTGACTCTTATGAATGATACATGAATTATAGGATATGTTTTCTAGCTCTTTTATCCTTGTGTAATTGCAACTTAAGAAGTTCAACTTTTTTGTTGTCTTCAGTTCCTTTGATAATAAAATGGAGGCCCTTTTTTCTTTATATCACAAGAGAGACAA

Network for GWHGAAZE006789

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00202.22	Aminotran_3	47	439	1.30E-118

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00819	rocD, OAT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0008483	molecular_function	transaminase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0004587	molecular_function	ornithine-oxo-acid transaminase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.892
	SRR3591706	second leaf	17.434
	SRR3591707	mature leaf	17.526
	SRR3591708	Shoot apex	28.099
	SRR3591709	Stem	96.601
	SRR3591710	White floral bud	44.238
	SRR3591711	White flower	60.101
	SRR3591712	Green floral bud	28.665
	SRR3591713	Yellow flower	88.489
SRP173429	SRR8316895	Juvenile bud stage	22.608
	SRR8316896	Juvenile bud stage	38.425
	SRR8316897	Juvenile bud stage	21.262
	SRR8316894	Third green stage	16.516
	SRR8316900	Third green stage	50.046
	SRR8316901	Third green stage	48.517
	SRR8316898	Complete white stage	30.298
	SRR8316899	Complete white stage	87.246
	SRR8316903	Complete white stage	60.325
	SRR8316902	Silver flowering stage	29.589
	SRR8316904	Silver flowering stage	44.360
	SRR8316905	Silver flowering stage	25.049
	SRR8316906	Gold flowering stage	73.473
	SRR8316907	Gold flowering stage	84.441
	SRR8316908	Gold flowering stage	117.495
SRP132670	SRR6706286	Control	34.783
	SRR6706287	Light intensity 50%	33.139
	SRR6706288	Light intensity 20%	32.165
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.048
	CNS0095593	Slightly white alabastrum(diploid) 2	28.831
	CNS0095594	Slightly white alabastrum(diploid) 3	29.296
	CNS0095595	Whole white alabastrum(diploid) 2	30.943
	CNS0095596	Whole white alabastrum(diploid) 3	33.902
	CNS0095597	Whole white alabastrum(diploid) 4	29.515
	CNS0095598	Silvery flower (diploied) 1	61.959
	CNS0095599	Silvery flower (diploied) 2	58.594
	CNS0095600	Silvery flower (diploied) 3	116.199
	CNS0095601	Golden flower (diploid) 1	68.316
	CNS0095602	Golden flower (diploid) 2	146.374
	CNS0095603	Golden flower (diploid) 3	145.869
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.511
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.818
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.810
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.948
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.799
	CNS0095610	Silvery flower (tetraploid) 1	116.844
	CNS0095611	Silvery flower (tetraploid) 2	117.818
	CNS0095612	Silvery flower (tetraploid) 3	59.966
	CNS0095613	Golden flower (tetraploid) 1	124.944
	CNS0095614	Golden flower (tetraploid) 2	124.614
	CNS0095615	Golden flower (tetraploid) 3	196.803
CRA001975	CRR073297	Stem 1	31.955
	CRR073298	Stem 2	33.296
	CRR073299	Stem 3	28.750
	CRR073300	Leaf 1	30.811
	CRR073301	Leaf 2	31.230
	CRR073302	Leaf 3	32.073
	CRR073303	Juvenile bud 1	34.672
	CRR073304	Juvenile bud 2	23.528
	CRR073305	Juvenile bud 3	52.160
	CRR073306	Third green 1	18.933
	CRR073307	Third green 2	18.604
	CRR073308	Third green 3	17.320
	CRR073309	Second white 1	25.228
	CRR073310	Second white 2	14.333
	CRR073311	Second white 3	12.824
	CRR073312	Silver flowering 1	20.729
	CRR073313	Silver flowering 2	21.832
	CRR073314	Silver flowering 3	18.257
	CRR073315	Gold flowering 1	19.392
	CRR073316	Gold flowering 2	24.201
	CRR073317	Gold flowering 3	19.889
	CRR073318	Tawny withering 1	38.740
	CRR073319	Tawny withering 2	33.988
	CRR073320	Tawny withering 3	38.330