Gene detail

Detail information of GWHGAAZE006790

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278480.1	0	PREDICTED: F-box protein At5g46170 [Vitis vinifera]
Swissprot	tr\|Q9FNK5\|FB285_ARATH	0	F-box protein At5g46170
trEMBL	tr\|F6HLT5\|F6HLT5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55809.1}
TAIR10	AT5G46170.1	1E-147	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32081390	32082550	+
GWHAAZE00000002	mRNA	32081390	32082550	+
GWHAAZE00000002	exon	32081390	32081978	+
GWHAAZE00000002	exon	32082015	32082550	+
GWHAAZE00000002	CDS	32081390	32081978	+
GWHAAZE00000002	CDS	32082015	32082550	+

Transcript Sequence
>GWHTAAZE006798 ATGTCTTCTCTCCGCTCAGATCTGACCAAAAAAATCTACCCCGAACCCTACTCTCCACCCTCGGGAATTGACCATTTCGACCGTCTCCCGGACTCCCTCTTGCTCCTAGTTTTCAACCGGATCGGTGACGTCAAAGCCCTCGGCCGCTGCTGCGTAGTCTCCCGAAGGTTCCACACCCTCGCCCCTCAGGTCGAGAACATCGTTGTTCGCGTTGACTGTGTTATATCCGACGATGATTCCCCCTCCGGAACAGGTTCTATTAATAAATCTCATGGTGCTTTTGCTAGTTTATTTCGCTTAGTTTTCGGTGGTATAGTTAAGCCTCTTCAAGCGTTGGGGCAATTTTTGGGACCCAAGAGATATGCTAGTGCTTCATCTTCTCTCATTGGGAATGGTGATGATGAAATTGATCAGAGTGGGGTTACTCATCATTCCCCCACTCAGGTTCTTAAGAATTTCAACGAGATTCGGAATTTGAAAATTGAGCTTCCCAGTGGAGAATTGGGGATTGATGATGGTGTTTTGTTGAAATGGAGGGCTGATTTCGGATCCACTCTTGATAACTGTGTGATTTTAGGGGCTTCATCTGACCCGAATGAAGGGGTTTTGGGTAATGGTGGTGCTATTGTTGGCGGAGATGATAATGGGAGTATACCGGAATCCTTTTACACGAATGGAGGGCTTAAATTGCGGGTTGTATGGACGATTAGTTCCTTAATTGCTGCATCTGCAAGGCATTACTTGCTTCAGCCCATAATTGCAGAGCATAAGACGTTGGGGAGTTTGGTTTTGACTGATGCTGATGGGCAAGGTGTTTTATGTATGAATAGGGATCAATTGGAGGAGCTTAGGGTGAAGCCATTGTCAGCTTCATCGGCTTCAAAACGAACCCTTGTGCCTGCTTTGAATATGAGGTTGTGGTATGCTCCACATTTGGAATTGCCTGATGGAACTGTGTTGAAGGGAGCTACTTTGGTAGCAATTCGGCCCAGTGAGCAATCGGTTGCAAAGAAGGAGGCTTCCGATGGTTCTTGGGTTTCGGCTGCTTTTGATGAGCCTTATGGAACAGCAGCAAAAATGTTGGTCAAGAGGAGGACCTATTGTCTTGAGATGAACTCCTTTTGA

Network for GWHGAAZE006790

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	27	61	1.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.713
	SRR3591706	second leaf	29.863
	SRR3591707	mature leaf	23.785
	SRR3591708	Shoot apex	27.622
	SRR3591709	Stem	27.739
	SRR3591710	White floral bud	34.755
	SRR3591711	White flower	30.739
	SRR3591712	Green floral bud	39.781
	SRR3591713	Yellow flower	26.142
SRP173429	SRR8316895	Juvenile bud stage	13.021
	SRR8316896	Juvenile bud stage	18.638
	SRR8316897	Juvenile bud stage	6.115
	SRR8316894	Third green stage	10.875
	SRR8316900	Third green stage	28.476
	SRR8316901	Third green stage	27.461
	SRR8316898	Complete white stage	14.646
	SRR8316899	Complete white stage	42.309
	SRR8316903	Complete white stage	35.072
	SRR8316902	Silver flowering stage	19.127
	SRR8316904	Silver flowering stage	25.269
	SRR8316905	Silver flowering stage	12.347
	SRR8316906	Gold flowering stage	39.529
	SRR8316907	Gold flowering stage	40.862
	SRR8316908	Gold flowering stage	41.956
SRP132670	SRR6706286	Control	44.135
	SRR6706287	Light intensity 50%	46.203
	SRR6706288	Light intensity 20%	46.145
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.642
	CNS0095593	Slightly white alabastrum(diploid) 2	23.715
	CNS0095594	Slightly white alabastrum(diploid) 3	18.885
	CNS0095595	Whole white alabastrum(diploid) 2	19.647
	CNS0095596	Whole white alabastrum(diploid) 3	23.310
	CNS0095597	Whole white alabastrum(diploid) 4	18.049
	CNS0095598	Silvery flower (diploied) 1	22.931
	CNS0095599	Silvery flower (diploied) 2	14.325
	CNS0095600	Silvery flower (diploied) 3	41.227
	CNS0095601	Golden flower (diploid) 1	19.645
	CNS0095602	Golden flower (diploid) 2	41.740
	CNS0095603	Golden flower (diploid) 3	37.475
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.458
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.936
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.662
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.328
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.363
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.972
	CNS0095610	Silvery flower (tetraploid) 1	31.534
	CNS0095611	Silvery flower (tetraploid) 2	29.836
	CNS0095612	Silvery flower (tetraploid) 3	37.948
	CNS0095613	Golden flower (tetraploid) 1	20.429
	CNS0095614	Golden flower (tetraploid) 2	32.937
	CNS0095615	Golden flower (tetraploid) 3	39.018
CRA001975	CRR073297	Stem 1	30.838
	CRR073298	Stem 2	34.962
	CRR073299	Stem 3	36.772
	CRR073300	Leaf 1	36.395
	CRR073301	Leaf 2	34.767
	CRR073302	Leaf 3	30.404
	CRR073303	Juvenile bud 1	42.424
	CRR073304	Juvenile bud 2	32.883
	CRR073305	Juvenile bud 3	51.545
	CRR073306	Third green 1	31.237
	CRR073307	Third green 2	27.839
	CRR073308	Third green 3	25.672
	CRR073309	Second white 1	33.655
	CRR073310	Second white 2	29.630
	CRR073311	Second white 3	27.901
	CRR073312	Silver flowering 1	40.553
	CRR073313	Silver flowering 2	39.730
	CRR073314	Silver flowering 3	30.971
	CRR073315	Gold flowering 1	25.019
	CRR073316	Gold flowering 2	30.077
	CRR073317	Gold flowering 3	34.067
	CRR073318	Tawny withering 1	46.009
	CRR073319	Tawny withering 2	28.768
	CRR073320	Tawny withering 3	39.023