Gene detail

Detail information of GWHGAAZE006811

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11273.1	4.59927E-98	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M0U9\|SKI19_ARATH	6E-79	F-box protein SKIP19
trEMBL	tr\|A0A068UUI9\|A0A068UUI9_COFCA	2E-98	Coffea canephora DH200=94 genomic scaffold, scaffold_53 {ECO:0000313\|EMBL:CDP11273.1}
TAIR10	AT4G05460.1	4E-64	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32465057	32470179	+
GWHAAZE00000002	mRNA	32465057	32470179	+
GWHAAZE00000002	exon	32465057	32465367	+
GWHAAZE00000002	exon	32469510	32470179	+
GWHAAZE00000002	CDS	32465057	32465367	+
GWHAAZE00000002	CDS	32469510	32470179	+

Transcript Sequence
>GWHTAAZE006819 ATGATGGAACCGGCACCGACAATGAGGAATTGGCTGGAACTCCCGCCGAATCTTACGGAGAACATACTCCACCGGCTAGGGGCGATAGAGATACTGGAGAGCGCACAGAAGGTCTGTACTACCTGGCGTATGATCTGCAAAGACCCGGCGATGTGGAGGGTCATTGATATGCGGAATTCGGGGGATTTATCTGCAATGCCCTATCTCCAGAAAATGTGCAGGCATGTTGTTGATCGAAGTGAAGGCCAATTGATCGATATCAATATCGAGTATTTTGGAACTGATGAATTACTTGATTATATCGTGGAAAGATCAAGTCAGCTAAAGGTGCTTAAAATATCTTGTTGCTATGGCTGCGTGTACAAAGGTTTGAGTGCAGCGGTTAAAAAATTACCATTATTAGAGGAGATTCACCTCAATCACACCTACATTGCTAAAGAAGCCATTGCAGATGCTGGATGTTTATGCCCTCACCTCAAGTCGTTCAAATTCAACATTCTTCAACAGTGCAAATTCTCGGACATTGAAGGATCGGAGGAACCAGAGGAGTTCAAATTCAACTCTGATGATGAGGCGCTTGCCATAAGCAGGAGTATGCCTCAATTACGCCACCTTCAGTTCATTGGAAATCAAATTACGGATAAGGGCTTGAAGGCCATTTTGGATGGTTGTCCTCTTCTTGAATCGCTTGATCTACGACTTTGCGACAATCTAAAACTTGAGGATGGTTTGGGAAAGAGGTGTTCTGAACAGATTAAGGATTTCAAGCGCCCGAATGACTCCATGAAAGGCTGCGAATTTGTTTTTGAAGATAAAGATGATGGCTATTGTAGTGATGGTGGATTTTCGTTTGATGATGATGATGACATATTCTCATTTGATTATGATGATCCATTTTCTTTGGATGATGATGATGCTGATGATGGTGATAGTGGTGTCTGCGGATTCTACTCTGAAGATGAACTGATGTTTGAAGTTTAG

Network for GWHGAAZE006811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	10	53	7.80E-08
PF13516.7	LRR_6	200	220	0.038

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.947
	SRR3591706	second leaf	25.741
	SRR3591707	mature leaf	27.293
	SRR3591708	Shoot apex	47.137
	SRR3591709	Stem	49.700
	SRR3591710	White floral bud	26.372
	SRR3591711	White flower	31.948
	SRR3591712	Green floral bud	43.240
	SRR3591713	Yellow flower	19.745
SRP173429	SRR8316895	Juvenile bud stage	29.041
	SRR8316896	Juvenile bud stage	50.487
	SRR8316897	Juvenile bud stage	21.515
	SRR8316894	Third green stage	13.001
	SRR8316900	Third green stage	40.281
	SRR8316901	Third green stage	34.325
	SRR8316898	Complete white stage	8.684
	SRR8316899	Complete white stage	50.640
	SRR8316903	Complete white stage	18.586
	SRR8316902	Silver flowering stage	8.082
	SRR8316904	Silver flowering stage	11.677
	SRR8316905	Silver flowering stage	5.922
	SRR8316906	Gold flowering stage	21.179
	SRR8316907	Gold flowering stage	14.613
	SRR8316908	Gold flowering stage	15.965
SRP132670	SRR6706286	Control	19.789
	SRR6706287	Light intensity 50%	20.857
	SRR6706288	Light intensity 20%	22.418
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.088
	CNS0095593	Slightly white alabastrum(diploid) 2	28.607
	CNS0095594	Slightly white alabastrum(diploid) 3	26.957
	CNS0095595	Whole white alabastrum(diploid) 2	24.158
	CNS0095596	Whole white alabastrum(diploid) 3	20.401
	CNS0095597	Whole white alabastrum(diploid) 4	21.777
	CNS0095598	Silvery flower (diploied) 1	32.868
	CNS0095599	Silvery flower (diploied) 2	42.175
	CNS0095600	Silvery flower (diploied) 3	36.911
	CNS0095601	Golden flower (diploid) 1	53.234
	CNS0095602	Golden flower (diploid) 2	47.020
	CNS0095603	Golden flower (diploid) 3	40.451
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.398
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.716
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.716
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.505
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.619
	CNS0095610	Silvery flower (tetraploid) 1	29.398
	CNS0095611	Silvery flower (tetraploid) 2	40.648
	CNS0095612	Silvery flower (tetraploid) 3	23.391
	CNS0095613	Golden flower (tetraploid) 1	15.995
	CNS0095614	Golden flower (tetraploid) 2	27.253
	CNS0095615	Golden flower (tetraploid) 3	15.674
CRA001975	CRR073297	Stem 1	17.607
	CRR073298	Stem 2	19.123
	CRR073299	Stem 3	20.632
	CRR073300	Leaf 1	19.443
	CRR073301	Leaf 2	16.762
	CRR073302	Leaf 3	22.329
	CRR073303	Juvenile bud 1	21.390
	CRR073304	Juvenile bud 2	17.851
	CRR073305	Juvenile bud 3	25.199
	CRR073306	Third green 1	4.640
	CRR073307	Third green 2	5.688
	CRR073308	Third green 3	5.757
	CRR073309	Second white 1	8.620
	CRR073310	Second white 2	9.080
	CRR073311	Second white 3	4.928
	CRR073312	Silver flowering 1	3.355
	CRR073313	Silver flowering 2	4.695
	CRR073314	Silver flowering 3	2.658
	CRR073315	Gold flowering 1	8.607
	CRR073316	Gold flowering 2	11.925
	CRR073317	Gold flowering 3	10.473
	CRR073318	Tawny withering 1	22.128
	CRR073319	Tawny withering 2	13.478
	CRR073320	Tawny withering 3	22.233