Detail information of GWHGAAZE006812


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011096646.14.1514E-120PREDICTED: putative F-box/LRR-repeat protein 23 [Sesamum indicum]
Swissprottr|Q9M0U9|SKI19_ARATH3E-91F-box protein SKIP19
trEMBLtr|A5ALT6|A5ALT6_VITVI1E-114Putative uncharacterized protein {ECO:0000313|EMBL:CAN82327.1}
TAIR10AT4G05460.14E-68RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3247968332483154+
GWHAAZE00000002mRNA3247968332483154+
GWHAAZE00000002exon3247968332480017+
GWHAAZE00000002exon3248253932483154+
GWHAAZE00000002CDS3247968332480017+
GWHAAZE00000002CDS3248253932483154+
Transcript Sequence

Network for GWHGAAZE006812

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box17602.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.122
SRR3591706second leaf9.401
SRR3591707mature leaf10.866
SRR3591708Shoot apex15.593
SRR3591709Stem23.799
SRR3591710White floral bud25.191
SRR3591711White flower29.142
SRR3591712Green floral bud29.445
SRR3591713Yellow flower23.481
SRP173429 SRR8316895Juvenile bud stage 14.862
SRR8316896Juvenile bud stage 21.883
SRR8316897Juvenile bud stage 9.407
SRR8316894Third green stage 9.474
SRR8316900Third green stage 33.769
SRR8316901Third green stage 28.620
SRR8316898Complete white stage 13.206
SRR8316899Complete white stage 42.226
SRR8316903Complete white stage 19.456
SRR8316902Silver flowering stage11.817
SRR8316904Silver flowering stage15.994
SRR8316905Silver flowering stage6.018
SRR8316906Gold flowering stage 21.207
SRR8316907Gold flowering stage 19.559
SRR8316908Gold flowering stage 18.802
SRP132670SRR6706286Control25.585
SRR6706287Light intensity 50%25.972
SRR6706288Light intensity 20%31.338
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.579
CNS0095593Slightly white alabastrum(diploid) 218.498
CNS0095594Slightly white alabastrum(diploid) 316.327
CNS0095595Whole white alabastrum(diploid) 220.702
CNS0095596Whole white alabastrum(diploid) 321.281
CNS0095597Whole white alabastrum(diploid) 418.064
CNS0095598Silvery flower (diploied) 117.899
CNS0095599Silvery flower (diploied) 217.086
CNS0095600Silvery flower (diploied) 335.118
CNS0095601Golden flower (diploid) 117.731
CNS0095602Golden flower (diploid) 230.525
CNS0095603Golden flower (diploid) 331.058
CNS0095604Slightly white alabastrum(tetraploid) 132.138
CNS0095605Slightly white alabastrum(tetraploid) 229.914
CNS0095606Slightly white alabastrum(tetraploid) 357.602
CNS0095607Whole white alabastrum(tetraploid) 123.986
CNS0095608Whole white alabastrum(tetraploid) 222.735
CNS0095609Whole white alabastrum(tetraploid) 343.943
CNS0095610Silvery flower (tetraploid) 140.184
CNS0095611Silvery flower (tetraploid) 255.341
CNS0095612Silvery flower (tetraploid) 357.251
CNS0095613Golden flower (tetraploid) 124.518
CNS0095614Golden flower (tetraploid) 233.936
CNS0095615Golden flower (tetraploid) 316.711
CRA001975CRR073297Stem 128.280
CRR073298Stem 221.776
CRR073299Stem 334.520
CRR073300Leaf 128.420
CRR073301Leaf 226.039
CRR073302Leaf 326.786
CRR073303Juvenile bud 134.485
CRR073304Juvenile bud 236.919
CRR073305Juvenile bud 338.491
CRR073306Third green 120.681
CRR073307Third green 224.178
CRR073308Third green 324.157
CRR073309Second white 129.040
CRR073310Second white 224.988
CRR073311Second white 319.658
CRR073312Silver flowering 117.128
CRR073313Silver flowering 225.962
CRR073314Silver flowering 312.984
CRR073315Gold flowering 110.966
CRR073316Gold flowering 210.552
CRR073317Gold flowering 314.902
CRR073318Tawny withering 123.164
CRR073319Tawny withering 222.155
CRR073320Tawny withering 324.803