Gene detail

Detail information of GWHGAAZE006815

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010275916.1	0	PREDICTED: protein kinase PINOID-like [Nelumbo nucifera]
Swissprot	tr\|O64682\|PID_ARATH	0	Protein kinase PINOID
trEMBL	tr\|A5C4C1\|A5C4C1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN62073.1}
TAIR10	AT2G34650.1	3E-154	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32512958	32515024	-
GWHAAZE00000002	mRNA	32512958	32515024	-
GWHAAZE00000002	exon	32512958	32513714	-
GWHAAZE00000002	exon	32514456	32515024	-
GWHAAZE00000002	CDS	32514456	32515024	-
GWHAAZE00000002	CDS	32512958	32513714	-

Transcript Sequence
>GWHTAAZE006823 ATGTTAGAGTTTCGACGGGACTCAGATAGCGAAGAAACAAGTTCCGAAGCCCTAAATTCAAGCCATAGTTCAATGAGTAGAGATAGTTGCCCTAGTTTTAGCCGATTGTCTTTCGAAGCTCTCGAACTACGGTCGGCGAGGTCAAATTCCCCGGATAATCTCACCTTGAAGCCGCACCGGTCATCGGACTTGTCCTGGCAAGCTATTAGATCGGCGACATCTGGACGGACAGGAGCCGGAGTAACCGCCGGAGACTTCCAAATCGTCCGGCAGATTGGAAGCGGAGACATCGGAAAAGTTTACCTGTGCCGTCTTCGAAGCGATGAGACGTGTTTTTACGCAATGAAGGTTGTGGATAGAGAGGTTTTGGCTCTGAAGAATAAGACTGAGAGAGCTGAAACGGAGAAGAAGATTCTTAAGAAGCTTGATCATCCTTTTTTGCCTACGCTTTATGCCGAATTCGAAGCTTCGCATTTCTCCTGCCTTGTGATGGAGTACTGTTCTGGTGGCGATTTGCACTCACTCAGACATAAACAGCCTCTTAAGCGCTTCTCTCTTAGCTCTGCAAGGTTTTATGCTGCAGAGGTTTTGGTAGCTCTAGAGTACCTTCACATGTTAGGAATCGTCTACAGAGATTTAAAGCCAGAAAACGTTTTAGTCAGATCGGACGGTCACATCATGCTCACAGATTTTGACCTCTCCCTCTGTTCAGATGCAATTCCAGCCGTTGAATCCCCCGACTTATCCCCACACCCTTCATCATCAACACCGCCAGTAAAACGAAACTCCCGTACACCATGCCTATTCTCCTGCCTTTCCAACTGGCTCTACCGGTCAAAGAAAATCCAAACAACCTCAACAAACCGGATGTTTGTGGCGGAGCCAGTCACCGCCAGGTCATGTTCCTTCGTCGGGACCCACGAGTACGTGGCACCTGAGGTGGCTTCAGGCAGGTCCCACGGCAACGCTGTGGACTGGTGGGCCCTGGGGATTTTCATCTACGAGATGATCTACGGACGGACCCCCTTCGCCGGAGTGAAAAACAGCGATACGCTGCGTAACATCGTGAAAGAACCCCTTACTTTTCCCACCGACGCTCCTGCCAGCGCGTGCGAGAAGCACGCGCGCGACTTAATATCCGGGTTGCTTGCTAAAGACCCGGAGCGTCGGGTCGGTTCAAAGCGCGGGGCGGCGGAAGTGAAGACCCACCCGTTTTTTAAGGGCTTGAACTTTGCGCTTGTACGGTCGTTGACGCCACCGGGAATCCGGCGACAGAAAACGATGATGGGGATATCCAGACAAACGGCGCCGTTTGATATGTTTTGA

Network for GWHGAAZE006815

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	86	234	5.10E-36
PF00069.26	Pkinase	300	406	5.80E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.366
	SRR3591706	second leaf	5.830
	SRR3591707	mature leaf	1.165
	SRR3591708	Shoot apex	5.500
	SRR3591709	Stem	1.363
	SRR3591710	White floral bud	9.019
	SRR3591711	White flower	4.857
	SRR3591712	Green floral bud	16.260
	SRR3591713	Yellow flower	0.436
SRP173429	SRR8316895	Juvenile bud stage	3.503
	SRR8316896	Juvenile bud stage	1.785
	SRR8316897	Juvenile bud stage	1.275
	SRR8316894	Third green stage	1.501
	SRR8316900	Third green stage	6.865
	SRR8316901	Third green stage	6.253
	SRR8316898	Complete white stage	6.311
	SRR8316899	Complete white stage	16.763
	SRR8316903	Complete white stage	7.932
	SRR8316902	Silver flowering stage	1.214
	SRR8316904	Silver flowering stage	2.957
	SRR8316905	Silver flowering stage	1.467
	SRR8316906	Gold flowering stage	2.808
	SRR8316907	Gold flowering stage	2.112
	SRR8316908	Gold flowering stage	1.725
SRP132670	SRR6706286	Control	8.187
	SRR6706287	Light intensity 50%	9.285
	SRR6706288	Light intensity 20%	9.998
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.601
	CNS0095593	Slightly white alabastrum(diploid) 2	3.704
	CNS0095594	Slightly white alabastrum(diploid) 3	3.215
	CNS0095595	Whole white alabastrum(diploid) 2	5.046
	CNS0095596	Whole white alabastrum(diploid) 3	3.302
	CNS0095597	Whole white alabastrum(diploid) 4	5.849
	CNS0095598	Silvery flower (diploied) 1	3.384
	CNS0095599	Silvery flower (diploied) 2	8.606
	CNS0095600	Silvery flower (diploied) 3	2.129
	CNS0095601	Golden flower (diploid) 1	1.943
	CNS0095602	Golden flower (diploid) 2	2.069
	CNS0095603	Golden flower (diploid) 3	1.426
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.742
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.911
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.524
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.738
	CNS0095610	Silvery flower (tetraploid) 1	1.690
	CNS0095611	Silvery flower (tetraploid) 2	3.638
	CNS0095612	Silvery flower (tetraploid) 3	3.221
	CNS0095613	Golden flower (tetraploid) 1	1.155
	CNS0095614	Golden flower (tetraploid) 2	1.002
	CNS0095615	Golden flower (tetraploid) 3	0.472
CRA001975	CRR073297	Stem 1	29.203
	CRR073298	Stem 2	24.036
	CRR073299	Stem 3	33.472
	CRR073300	Leaf 1	24.720
	CRR073301	Leaf 2	23.693
	CRR073302	Leaf 3	23.230
	CRR073303	Juvenile bud 1	38.743
	CRR073304	Juvenile bud 2	28.599
	CRR073305	Juvenile bud 3	37.373
	CRR073306	Third green 1	27.652
	CRR073307	Third green 2	18.160
	CRR073308	Third green 3	23.049
	CRR073309	Second white 1	9.507
	CRR073310	Second white 2	6.550
	CRR073311	Second white 3	1.070
	CRR073312	Silver flowering 1	0.746
	CRR073313	Silver flowering 2	0.165
	CRR073314	Silver flowering 3	0.440
	CRR073315	Gold flowering 1	0.682
	CRR073316	Gold flowering 2	1.095
	CRR073317	Gold flowering 3	1.653
	CRR073318	Tawny withering 1	1.011
	CRR073319	Tawny withering 2	0.635
	CRR073320	Tawny withering 3	0.970