Gene detail

Detail information of GWHGAAZE006816

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002280735.1	PREDICTED: DNA damage-binding protein 1 [Vitis vinifera]
Swissprot	tr\|Q6QNU4\|DDB1_SOLLC	DNA damage-binding protein 1
trEMBL	tr\|F6HLW1\|F6HLW1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55836.1}
TAIR10	AT4G05420.1	damaged DNA binding protein 1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32544564	32566076	+
GWHAAZE00000002	mRNA	32544564	32566076	+
GWHAAZE00000002	exon	32544564	32544754	+
GWHAAZE00000002	exon	32546403	32546451	+
GWHAAZE00000002	exon	32550677	32550736	+
GWHAAZE00000002	exon	32550859	32550950	+
GWHAAZE00000002	exon	32551661	32551712	+
GWHAAZE00000002	exon	32551839	32551901	+
GWHAAZE00000002	exon	32552031	32552080	+
GWHAAZE00000002	exon	32554444	32554519	+
GWHAAZE00000002	exon	32554659	32554868	+
GWHAAZE00000002	exon	32556030	32556136	+
GWHAAZE00000002	exon	32556794	32556902	+
GWHAAZE00000002	exon	32557891	32558091	+
GWHAAZE00000002	exon	32558202	32558417	+
GWHAAZE00000002	exon	32558777	32558887	+
GWHAAZE00000002	exon	32560817	32560862	+
GWHAAZE00000002	exon	32560970	32561091	+
GWHAAZE00000002	exon	32561760	32562034	+
GWHAAZE00000002	exon	32562471	32562822	+
GWHAAZE00000002	exon	32563094	32563378	+
GWHAAZE00000002	exon	32565495	32566076	+
GWHAAZE00000002	five_prime_UTR	32544564	32544647	+
GWHAAZE00000002	CDS	32544648	32544754	+
GWHAAZE00000002	CDS	32546403	32546451	+
GWHAAZE00000002	CDS	32550677	32550736	+
GWHAAZE00000002	CDS	32550859	32550950	+
GWHAAZE00000002	CDS	32551661	32551712	+
GWHAAZE00000002	CDS	32551839	32551901	+
GWHAAZE00000002	CDS	32552031	32552080	+
GWHAAZE00000002	CDS	32554444	32554519	+
GWHAAZE00000002	CDS	32554659	32554868	+
GWHAAZE00000002	CDS	32556030	32556136	+
GWHAAZE00000002	CDS	32556794	32556902	+
GWHAAZE00000002	CDS	32557891	32558091	+
GWHAAZE00000002	CDS	32558202	32558417	+
GWHAAZE00000002	CDS	32558777	32558887	+
GWHAAZE00000002	CDS	32560817	32560862	+
GWHAAZE00000002	CDS	32560970	32561091	+
GWHAAZE00000002	CDS	32561760	32562034	+
GWHAAZE00000002	CDS	32562471	32562822	+
GWHAAZE00000002	CDS	32563094	32563378	+
GWHAAZE00000002	CDS	32565495	32566076	+

Transcript Sequence
>GWHTAAZE006824 TGTATTGAGCTAGGGTTCCATTGAAGTGGAGATCTTTTAGGGTAGATACAACCTATACTTACATATAGATAGAGATAGAGGAAAATGAGTAGTATATATAATTACGTGGTGACGGCTCACAAACCTACCAACGTTACGCATTCGTGCGTCGGCAATTTCACTGGCCCAAATGATCTCAATCTCATTGTTGCGAAATGCACCCGTATCGAGATTCATTTACTCACTCCTCAAGGCTTGCAGCCTATGTTGGATGTGCCAATATATGGAAGAATTGCAACACTTGAACTTTTCCGCCCTCATACTGAATCACAAGATCTTCTCTTCATCGCGACAGAAAGATATAAATTCTGTGTCATTCAGTGGGATTCTGAAGCAGCTGAGGTTATTACAAGAGCAATGGGGGATGTCTCGGATCGTATAGGCCGACCTACGGACAACGGTCAGATTGGCATAATTGATCCCGACTGCAGATTAATTGGACTCCATTTGTACGATGGGTTATTTAAGGTCATTCCACTTGATAATAAAGGGCAGCTGAAGGAAGCATTCAACATTAGGCTCGAGGAGCTTCAAGTTTTGGATATCAAGTTTCTCTATGGTTGCTCAAAGCCTACCATTGTTGTTCTTTACCAGGATAACAAGGATGCTCGTCATGTTAAAACATATGAGGTCGCATTGAAGGATAAGGATTTTGTAGAGGGTCCATGGTCTCAAAACAATCTTGATAATGGAGCTGATTTGCTAATACCAGTTCCTGCACCTCTTTGTGGTGTCCTAATTATTGGAGAAGAAACGATCGTGTATTGTAGTGCCTCTGCTTTTAAAGCAATCCCCATTAGACCTTCCATCACGAGAGCTTATGGAAGAGTTGACCCCGATGGTTCTAGGTACTTGCTTGGTGATCACAATGGGCTTCTTCACTTGCTCGTTATAACCCATGAGAAAGAGAAAGTTACTGGACTCAAAATTGAGCTCTTGGGGGAAACTTCTATTGCGTCAACAATATCGTATCTTGATAATGCATTTGTGTATGTTGGCTCAAGCTATGGCGATTCACAGCTCATAAAGCTAAATCTCCACCCTGATCCAAAAGGTTCTTACGTAGAAGTTTTAGAAAGATACGTAAATCTGGGGCCAATTGTTGATTTCTGTGTGGTGGACTTGGAGAGGCAAGGTCAAGGTCAGGTTGTAACTTGCTCTGGAGCCTATAAAGATGGTTCTCTTCGCATAGTTCGAAATGGAATTGGAATTAACGAACAGGCATCGGTAGAACTTCAAGGGATTAAAGGAATGTGGTCCTTAAGATCAGCTACTGATGATCCGTTTGACACCTTCTTGGTTGTTAGCTTCATTAGTGAGACAAGGATTTTGGCGATGAATCTTGAGGACGAGTTGGAAGAAACAGAGATAGAGGGTTTTTTCTCCCAAGCCCAGACTTTGTTCTGCCATGATGCGGTATACAATCAACTTGTACAGGTTACATCAGCCTCTGTAAGACTGGTCAGTTCTACATCTAGAGAGCTACGAAATGAATGGTTTGCTCCATCCGGCTATTCAATCAATGTTGCCACTGCTAACGCGACCCAGGTTTTAGTGGCTACAGGGGGTGGCCATCTAGTTTACCTTGAAATTGTTGGAATGTGGACTGATATAAGTGTTAGGATATTTTCTCTTCCTGAACTTAATCTCATTACCAAGGAGCATTTGGGAGGAGAGATAATTCCTCGCTCGGTTCTTCTATGTGCCTTTGAAGGGATATCTTACTTGTTATGTGCCCTTGGAGATGGTCATCTTCTTAATTTCCTATTGAACATGAAAACGGGCGAATTGACGGATAGGAAGAAGGTCTCTCTTGGAACTCAACCCATAACGCTTCGTACCTTCTCGTCCAAGAATACTACGCATGTCTTCGCTGCCTCGGATAGACCCACTGTCATTTACAGCAGTAACAAGAAACTACTCTACAGCAATGTAAACCTCAAGGAAGTGAGTCATATGTGCCCTTTCAACTCTGCTGCTTTCCCAGACAGCCTTGCCATTGCAAAAGAAGGTGAGCTAACAATTGGCACAATCGATGATATCCAGAAGCTTCACATCCGCTCTATTCCGCTTGGAGAACACGCACGCCGTATATGCCATCAAGAGCAGTCACGGACGTTCGCCATATGTAGTCTAAAGTACAACCAGTCGAGCACTGAAGAATCTGAGATGCACTTTATACGCTTGTTAGATGATCAGACTTTTGAGTTCATATCCACTTACCCACTTGACCAATTTGAGTATGGTTGCTCCATACTTAGTTGCTCTTTCTCTGATGATGCTAATGTGTATTACTGTGTTGGGACTGCATATGTCATGCCTGAGGAGAACGAACCAACCAAGGGACGAATACTAGTTTTTGTCGTTGAAGATGGGAAGTTGCAGCTAATAGCTGAGAAAGAAACTAAGGGGGCTGTGTACTCTCTAAATGCATTTAATGGGAAACTGCTTGCTGCTATAAATCAAAAGATTCAATTATACAAGTGGATGCTTCGTGATGATGGTACACGTGAGTTGCAATCTGAATGCGGACATCATGGGCATATACTTGCTCTTTATGTACAAACTCGTGGAGATTTCATTGTTGTTGGTGACTTGATGAAATCAATCTCTCTCTTGATTTACAAGCACGAGGAGGGTGCTATTGAGGAGCGAGCCCGAGACTATAATGCTAACTGGATGTCAGCGGTGGAGATTCTGGATGACGACGTTTACCTCGGGGCTGAGAATAACTTCAATATTTTCACGGTCCGCAAAAACAGCGAAGGTGCCACCGACGAGGAGCGGGGCCGCCTCGAGGTGGTGGGGGAGTACCACCTTGGAGAGTTCGTCAATCGGTTCAGACACGGATCCCTTGTAATGCGTCTACCGGATTCTGATGTGGGCCAGATCCCAACCGTGATTTTTGGCACAGTTAACGGAGTGATAGGGGTAATTGCGTCGTTACCACCTGAGCAGTACTCATTCTTGGAGAAGTTGCAGGCGAATTTGAGGAGGGTGATAAAGGGGGTAGGGGGGTTGAACCACGAGCACTGGAGATCGTTTAACAGCGAGAAGAAAACGGTGGAGGCAAAGAATTTCTTGGACGGGGATTTGATTGAGAGTTTTCTTGATCTTGGGCGGAGTAAAATGGAGGAAATTTCAAAGGCGATGGGGGTTCCGGTGGAGGACCTAATGAAGAGCGTGGAGGAGTTGACAAGGTTGCACTAG

Network for GWHGAAZE006816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10433.10	MMS1_N	77	517	3.40E-107
PF03178.16	CPSF_A	711	1023	3.90E-80

Protein Sequence

>GWHPAAZE006820
MSSIYNYVVTAHKPTNVTHSCVGNFTGPNDLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHTESQDLLFIATERYKFCVIQWDSEAAEVITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPLDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPAPLCGVLIIGEETIVYCSASAFKAIPIRPSITRAYGRVDPDGSRYLLGDHNGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAFVYVGSSYGDSQLIKLNLHPDPKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFFSQAQTLFCHDAVYNQLVQVTSASVRLVSSTSRELRNEWFAPSGYSINVATANATQVLVATGGGHLVYLEIVGMWTDISVRIFSLPELNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNQSSTEESEMHFIRLLDDQTFEFISTYPLDQFEYGCSILSCSFSDDANVYYCVGTAYVMPEENEPTKGRILVFVVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDVYLGAENNFNIFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPPEQYSFLEKLQANLRRVIKGVGGLNHEHWRSFNSEKKTVEAKNFLDGDLIESFLDLGRSKMEEISKAMGVPVEDLMKSVEELTRLH

Gene family

Gene family	subfamily
Ubiquitin Family	DDB1

KEGG pathway

KO	Enzyme	pathway	mapID
K10610	DDB1	Ubiquitin mediated proteolysis	map04120
K10610	DDB1	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.377
	SRR3591706	second leaf	24.888
	SRR3591707	mature leaf	23.126
	SRR3591708	Shoot apex	38.854
	SRR3591709	Stem	25.902
	SRR3591710	White floral bud	26.216
	SRR3591711	White flower	33.753
	SRR3591712	Green floral bud	34.451
	SRR3591713	Yellow flower	28.667
SRP173429	SRR8316895	Juvenile bud stage	20.964
	SRR8316896	Juvenile bud stage	30.838
	SRR8316897	Juvenile bud stage	18.105
	SRR8316894	Third green stage	13.652
	SRR8316900	Third green stage	34.314
	SRR8316901	Third green stage	28.656
	SRR8316898	Complete white stage	7.962
	SRR8316899	Complete white stage	31.646
	SRR8316903	Complete white stage	19.148
	SRR8316902	Silver flowering stage	9.817
	SRR8316904	Silver flowering stage	15.399
	SRR8316905	Silver flowering stage	7.398
	SRR8316906	Gold flowering stage	26.310
	SRR8316907	Gold flowering stage	20.394
	SRR8316908	Gold flowering stage	29.265
SRP132670	SRR6706286	Control	29.481
	SRR6706287	Light intensity 50%	32.323
	SRR6706288	Light intensity 20%	34.771
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.926
	CNS0095593	Slightly white alabastrum(diploid) 2	18.043
	CNS0095594	Slightly white alabastrum(diploid) 3	17.765
	CNS0095595	Whole white alabastrum(diploid) 2	15.442
	CNS0095596	Whole white alabastrum(diploid) 3	13.277
	CNS0095597	Whole white alabastrum(diploid) 4	14.276
	CNS0095598	Silvery flower (diploied) 1	20.960
	CNS0095599	Silvery flower (diploied) 2	19.141
	CNS0095600	Silvery flower (diploied) 3	31.269
	CNS0095601	Golden flower (diploid) 1	15.571
	CNS0095602	Golden flower (diploid) 2	30.003
	CNS0095603	Golden flower (diploid) 3	28.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.751
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.873
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.048
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.907
	CNS0095610	Silvery flower (tetraploid) 1	43.272
	CNS0095611	Silvery flower (tetraploid) 2	40.684
	CNS0095612	Silvery flower (tetraploid) 3	33.293
	CNS0095613	Golden flower (tetraploid) 1	21.689
	CNS0095614	Golden flower (tetraploid) 2	38.119
	CNS0095615	Golden flower (tetraploid) 3	28.012
CRA001975	CRR073297	Stem 1	35.657
	CRR073298	Stem 2	34.363
	CRR073299	Stem 3	29.076
	CRR073300	Leaf 1	38.818
	CRR073301	Leaf 2	30.788
	CRR073302	Leaf 3	24.037
	CRR073303	Juvenile bud 1	29.111
	CRR073304	Juvenile bud 2	23.299
	CRR073305	Juvenile bud 3	41.215
	CRR073306	Third green 1	8.016
	CRR073307	Third green 2	6.092
	CRR073308	Third green 3	9.328
	CRR073309	Second white 1	14.270
	CRR073310	Second white 2	12.019
	CRR073311	Second white 3	15.794
	CRR073312	Silver flowering 1	10.714
	CRR073313	Silver flowering 2	13.899
	CRR073314	Silver flowering 3	9.790
	CRR073315	Gold flowering 1	18.522
	CRR073316	Gold flowering 2	31.726
	CRR073317	Gold flowering 3	19.897
	CRR073318	Tawny withering 1	20.204
	CRR073319	Tawny withering 2	16.595
	CRR073320	Tawny withering 3	19.471