Detail information of GWHGAAZE006835


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264140.10PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Vitis vinifera]
Swissprottr|Q9SUC0|3HIDH_ARATH7E-171Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial (Precursor)
trEMBLtr|D7TKK7|D7TKK7_VITVI03-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}
TAIR10AT4G20930.17E-1336-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3290953432919035-
GWHAAZE00000002mRNA3290953432919035-
GWHAAZE00000002exon3291888832919035-
GWHAAZE00000002exon3291724932917337-
GWHAAZE00000002exon3291683932916953-
GWHAAZE00000002exon3291497032915120-
GWHAAZE00000002exon3291471132914793-
GWHAAZE00000002exon3291324032913335-
GWHAAZE00000002exon3291251632912658-
GWHAAZE00000002exon3291196132912045-
GWHAAZE00000002exon3291160632911685-
GWHAAZE00000002exon3290953432909632-
GWHAAZE00000002five_prime_UTR3291899632919035-
GWHAAZE00000002CDS3291888832918995-
GWHAAZE00000002CDS3291724932917337-
GWHAAZE00000002CDS3291683932916953-
GWHAAZE00000002CDS3291497032915120-
GWHAAZE00000002CDS3291471132914793-
GWHAAZE00000002CDS3291324032913335-
GWHAAZE00000002CDS3291251632912658-
GWHAAZE00000002CDS3291196132912045-
GWHAAZE00000002CDS3291160632911685-
GWHAAZE00000002CDS3290954532909632-
GWHAAZE00000002three_prime_UTR3290953432909544-
Transcript Sequence

Network for GWHGAAZE006835

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03446.16NAD_binding_2382083.70E-41
PF14833.7NAD_binding_112113375.30E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K23146HPD1 Metabolic pathways map01100
Carbon metabolismmap01200
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0051287molecular_functionNAD binding
GO:0008442molecular_function3-hydroxyisobutyrate dehydrogenase activity
GO:0050661molecular_functionNADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.663
SRR3591706second leaf7.865
SRR3591707mature leaf9.106
SRR3591708Shoot apex13.333
SRR3591709Stem19.755
SRR3591710White floral bud13.862
SRR3591711White flower14.265
SRR3591712Green floral bud18.837
SRR3591713Yellow flower19.450
SRP173429 SRR8316895Juvenile bud stage 11.410
SRR8316896Juvenile bud stage 13.850
SRR8316897Juvenile bud stage 6.374
SRR8316894Third green stage 6.610
SRR8316900Third green stage 22.929
SRR8316901Third green stage 17.749
SRR8316898Complete white stage 9.254
SRR8316899Complete white stage 23.462
SRR8316903Complete white stage 12.029
SRR8316902Silver flowering stage5.366
SRR8316904Silver flowering stage8.555
SRR8316905Silver flowering stage4.554
SRR8316906Gold flowering stage 14.303
SRR8316907Gold flowering stage 12.686
SRR8316908Gold flowering stage 12.022
SRP132670SRR6706286Control11.459
SRR6706287Light intensity 50%12.158
SRR6706288Light intensity 20%13.262
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.909
CNS0095593Slightly white alabastrum(diploid) 211.420
CNS0095594Slightly white alabastrum(diploid) 310.618
CNS0095595Whole white alabastrum(diploid) 212.754
CNS0095596Whole white alabastrum(diploid) 311.287
CNS0095597Whole white alabastrum(diploid) 410.331
CNS0095598Silvery flower (diploied) 18.553
CNS0095599Silvery flower (diploied) 28.460
CNS0095600Silvery flower (diploied) 316.295
CNS0095601Golden flower (diploid) 17.969
CNS0095602Golden flower (diploid) 213.902
CNS0095603Golden flower (diploid) 313.774
CNS0095604Slightly white alabastrum(tetraploid) 110.337
CNS0095605Slightly white alabastrum(tetraploid) 28.094
CNS0095606Slightly white alabastrum(tetraploid) 312.076
CNS0095607Whole white alabastrum(tetraploid) 17.741
CNS0095608Whole white alabastrum(tetraploid) 28.863
CNS0095609Whole white alabastrum(tetraploid) 312.555
CNS0095610Silvery flower (tetraploid) 113.387
CNS0095611Silvery flower (tetraploid) 215.936
CNS0095612Silvery flower (tetraploid) 314.197
CNS0095613Golden flower (tetraploid) 17.654
CNS0095614Golden flower (tetraploid) 211.394
CNS0095615Golden flower (tetraploid) 311.413
CRA001975CRR073297Stem 114.115
CRR073298Stem 211.317
CRR073299Stem 313.189
CRR073300Leaf 115.642
CRR073301Leaf 214.907
CRR073302Leaf 314.044
CRR073303Juvenile bud 115.631
CRR073304Juvenile bud 213.762
CRR073305Juvenile bud 314.901
CRR073306Third green 16.218
CRR073307Third green 25.195
CRR073308Third green 37.046
CRR073309Second white 110.734
CRR073310Second white 29.502
CRR073311Second white 36.249
CRR073312Silver flowering 14.102
CRR073313Silver flowering 23.689
CRR073314Silver flowering 33.629
CRR073315Gold flowering 17.316
CRR073316Gold flowering 29.750
CRR073317Gold flowering 34.304
CRR073318Tawny withering 111.783
CRR073319Tawny withering 29.841
CRR073320Tawny withering 38.458