Detail information of GWHGAAZE006841


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006353011.10PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like isoform X1 [Solanum tuberosum]
Swissprottr|Q8VYJ1|MENE_ARATH02-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal (Precursor)
trEMBLtr|D7TKJ9|D7TKJ9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI31021.3}
TAIR10AT1G30520.13E-179acyl-activating enzyme 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3299635933005302-
GWHAAZE00000002mRNA3299635933005302-
GWHAAZE00000002exon3299635932996488-
GWHAAZE00000002exon3299668032996894-
GWHAAZE00000002exon3299752732997915-
GWHAAZE00000002exon3299832332998450-
GWHAAZE00000002exon3299878132998973-
GWHAAZE00000002exon3299921132999297-
GWHAAZE00000002exon3299969932999803-
GWHAAZE00000002exon3300032133000486-
GWHAAZE00000002exon3300332333003395-
GWHAAZE00000002exon3300510333005302-
GWHAAZE00000002CDS3300510333005302-
GWHAAZE00000002CDS3300332333003395-
GWHAAZE00000002CDS3300032133000486-
GWHAAZE00000002CDS3299969932999803-
GWHAAZE00000002CDS3299921132999297-
GWHAAZE00000002CDS3299878132998973-
GWHAAZE00000002CDS3299832332998450-
GWHAAZE00000002CDS3299752732997915-
GWHAAZE00000002CDS3299668032996894-
GWHAAZE00000002CDS3299635932996488-
Transcript Sequence

Network for GWHGAAZE006841

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding224383.30E-69
PF13193.7AMP-binding_C4475401.30E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14760AAE14 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.651
SRR3591706second leaf30.625
SRR3591707mature leaf18.229
SRR3591708Shoot apex26.745
SRR3591709Stem3.947
SRR3591710White floral bud1.863
SRR3591711White flower2.093
SRR3591712Green floral bud0.590
SRR3591713Yellow flower0.087
SRP173429 SRR8316895Juvenile bud stage 3.063
SRR8316896Juvenile bud stage 3.863
SRR8316897Juvenile bud stage 2.176
SRR8316894Third green stage 1.126
SRR8316900Third green stage 1.299
SRR8316901Third green stage 1.168
SRR8316898Complete white stage 0.460
SRR8316899Complete white stage 1.002
SRR8316903Complete white stage 1.630
SRR8316902Silver flowering stage0.128
SRR8316904Silver flowering stage0.211
SRR8316905Silver flowering stage0.117
SRR8316906Gold flowering stage 0.181
SRR8316907Gold flowering stage 0.339
SRR8316908Gold flowering stage 0.599
SRP132670SRR6706286Control1.529
SRR6706287Light intensity 50%1.143
SRR6706288Light intensity 20%1.238
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.550
CNS0095593Slightly white alabastrum(diploid) 21.374
CNS0095594Slightly white alabastrum(diploid) 31.528
CNS0095595Whole white alabastrum(diploid) 22.186
CNS0095596Whole white alabastrum(diploid) 31.137
CNS0095597Whole white alabastrum(diploid) 41.325
CNS0095598Silvery flower (diploied) 110.358
CNS0095599Silvery flower (diploied) 27.136
CNS0095600Silvery flower (diploied) 31.682
CNS0095601Golden flower (diploid) 110.451
CNS0095602Golden flower (diploid) 23.061
CNS0095603Golden flower (diploid) 33.177
CNS0095604Slightly white alabastrum(tetraploid) 11.430
CNS0095605Slightly white alabastrum(tetraploid) 22.408
CNS0095606Slightly white alabastrum(tetraploid) 33.085
CNS0095607Whole white alabastrum(tetraploid) 11.155
CNS0095608Whole white alabastrum(tetraploid) 21.064
CNS0095609Whole white alabastrum(tetraploid) 30.755
CNS0095610Silvery flower (tetraploid) 10.493
CNS0095611Silvery flower (tetraploid) 21.324
CNS0095612Silvery flower (tetraploid) 30.225
CNS0095613Golden flower (tetraploid) 10.079
CNS0095614Golden flower (tetraploid) 20.323
CNS0095615Golden flower (tetraploid) 30.054
CRA001975CRR073297Stem 19.461
CRR073298Stem 27.112
CRR073299Stem 35.367
CRR073300Leaf 12.696
CRR073301Leaf 22.558
CRR073302Leaf 31.202
CRR073303Juvenile bud 10.766
CRR073304Juvenile bud 20.402
CRR073305Juvenile bud 30.946
CRR073306Third green 10.149
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.025
CRR073311Second white 30.107
CRR073312Silver flowering 10.131
CRR073313Silver flowering 20.100
CRR073314Silver flowering 30.000
CRR073315Gold flowering 117.528
CRR073316Gold flowering 224.650
CRR073317Gold flowering 38.819
CRR073318Tawny withering 13.646
CRR073319Tawny withering 25.864
CRR073320Tawny withering 32.245