Gene detail

Detail information of GWHGAAZE006892

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009789754.1	0	PREDICTED: UDP-arabinose 4-epimerase 1 [Nicotiana sylvestris]
Swissprot	tr\|Q9SA77\|ARAE1_ARATH	0	UDP-arabinose 4-epimerase 1
trEMBL	tr\|M4QEJ8\|M4QEJ8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ12947.1}
TAIR10	AT1G30620.2	2E-165	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	33737338	33742146	+
GWHAAZE00000002	mRNA	33737338	33742146	+
GWHAAZE00000002	exon	33737338	33737383	+
GWHAAZE00000002	exon	33738133	33738257	+
GWHAAZE00000002	exon	33738803	33738916	+
GWHAAZE00000002	exon	33739388	33739495	+
GWHAAZE00000002	exon	33739604	33739695	+
GWHAAZE00000002	exon	33739977	33740118	+
GWHAAZE00000002	exon	33740692	33740786	+
GWHAAZE00000002	exon	33740972	33741101	+
GWHAAZE00000002	exon	33741401	33741443	+
GWHAAZE00000002	exon	33741905	33742146	+
GWHAAZE00000002	CDS	33737338	33737383	+
GWHAAZE00000002	CDS	33738133	33738257	+
GWHAAZE00000002	CDS	33738803	33738916	+
GWHAAZE00000002	CDS	33739388	33739495	+
GWHAAZE00000002	CDS	33739604	33739695	+
GWHAAZE00000002	CDS	33739977	33740118	+
GWHAAZE00000002	CDS	33740692	33740786	+
GWHAAZE00000002	CDS	33740972	33741101	+
GWHAAZE00000002	CDS	33741401	33741443	+
GWHAAZE00000002	CDS	33741905	33742146	+

Transcript Sequence
>GWHTAAZE006900 ATGCTAAGAAATCAGACAAGGCCAAACAGAGCTATGTCTTTAGGAGGCATGGACTATACAGACCCAAAGAAGAGGAGCAATTTTTTCGGAAAAATTCTTTTGGCCGCTGCATTAACAGCATTGTGTATTCTTATGCTCAAACAATCCCAATCTTTCAACACCCCCAGCCCATTTTCGCGCCTCGAAACAGGGGTTACTCATGTATTAGTAACAGGAGGTGCTGGATACATTGGTTCTCATGCTTCCCTACGACTTTTGAAGGATTCGTATCGTGTAACTATAGTGGACAATCTCTCTCGAGGAAACATCGGTGCTGTCAAGATTCTACAAGAACTATATCCAGAACATGGGAGACTTCAGTTCATAAAGGCTGACTTGGGCGATCCCAAAGCCCTGGAAAAATTATTCTCGGAAAATTCTTTTGATGCTGTGATGCATTTTGCGGCTGTTGCATATGTTGCAGAAAGCACATATGATCCCATCCGATATTATCACAATATTACAATGAACACGATGCTTATAATAAAGGCTATGGCAGCACACGGCGTGAAGACTCTAATATATTCTAGTACGTGCGCAACATACGGCGAACCTGAAAAAATGCCCATTACAGAAGAAACTCCGCAGTTTCCAATTAATCCATACGGAAAAGCAAAGAAAATGTCAGAAGATATCATTCTGGATTTCCATAAAAACTCAGACATGGCTTTCATGATCTTAAGATACTTCAATGTGATTGGTTCAGATCCTGAGGCAAGATTAGGAGAAGCTCCAAGGCCAGAACTACGTGAGATGGGACGAATATCAACTGCTTGCTTTGATGCTGCTCGTGGGATTACAAACGGGCTTAAGATTAGAGGAACGGACTATAAAACACCGGATGGCACTTGCATACGAAGGTCGGTCCGCGAATTCGTAGAAGCTTGCAAGAAGGTGACGGGGGTACCCTTGAAAATCGAGTACCTCCCCCGTAGGCCTGGTGACTATGCTGAAGTTTACAGTGACCCCACAAAGATCTTACGCGAGTTGAACTGGAGTGCCCGTTACATGGATCTTGAGGAAAGTCTGCGGAATGCGTGGAGATGGCAAAAGACTCATCTTAACGGCTACGGCCCACCTTTGGCCACATCTACCTAA

Network for GWHGAAZE006892

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	69	247	1.70E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12448	UXE, uxe	Metabolic pathways	map01100
K12448	UXE, uxe	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.963
	SRR3591706	second leaf	4.724
	SRR3591707	mature leaf	0.794
	SRR3591708	Shoot apex	7.887
	SRR3591709	Stem	270.552
	SRR3591710	White floral bud	68.293
	SRR3591711	White flower	3.824
	SRR3591712	Green floral bud	192.629
	SRR3591713	Yellow flower	1.089
SRP173429	SRR8316895	Juvenile bud stage	4.834
	SRR8316896	Juvenile bud stage	6.422
	SRR8316897	Juvenile bud stage	3.120
	SRR8316894	Third green stage	9.621
	SRR8316900	Third green stage	132.572
	SRR8316901	Third green stage	119.988
	SRR8316898	Complete white stage	3.028
	SRR8316899	Complete white stage	3.703
	SRR8316903	Complete white stage	2.544
	SRR8316902	Silver flowering stage	0.732
	SRR8316904	Silver flowering stage	2.797
	SRR8316905	Silver flowering stage	0.568
	SRR8316906	Gold flowering stage	0.924
	SRR8316907	Gold flowering stage	0.543
	SRR8316908	Gold flowering stage	0.622
SRP132670	SRR6706286	Control	85.444
	SRR6706287	Light intensity 50%	88.214
	SRR6706288	Light intensity 20%	82.303
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.833
	CNS0095593	Slightly white alabastrum(diploid) 2	47.151
	CNS0095594	Slightly white alabastrum(diploid) 3	34.614
	CNS0095595	Whole white alabastrum(diploid) 2	278.249
	CNS0095596	Whole white alabastrum(diploid) 3	320.723
	CNS0095597	Whole white alabastrum(diploid) 4	384.809
	CNS0095598	Silvery flower (diploied) 1	4.181
	CNS0095599	Silvery flower (diploied) 2	4.820
	CNS0095600	Silvery flower (diploied) 3	2.729
	CNS0095601	Golden flower (diploid) 1	2.981
	CNS0095602	Golden flower (diploid) 2	1.997
	CNS0095603	Golden flower (diploid) 3	1.522
	CNS0095604	Slightly white alabastrum(tetraploid) 1	188.279
	CNS0095605	Slightly white alabastrum(tetraploid) 2	209.140
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.278
	CNS0095607	Whole white alabastrum(tetraploid) 1	552.282
	CNS0095608	Whole white alabastrum(tetraploid) 2	674.357
	CNS0095609	Whole white alabastrum(tetraploid) 3	287.096
	CNS0095610	Silvery flower (tetraploid) 1	2.090
	CNS0095611	Silvery flower (tetraploid) 2	5.268
	CNS0095612	Silvery flower (tetraploid) 3	15.367
	CNS0095613	Golden flower (tetraploid) 1	2.120
	CNS0095614	Golden flower (tetraploid) 2	1.229
	CNS0095615	Golden flower (tetraploid) 3	10.601
CRA001975	CRR073297	Stem 1	9.221
	CRR073298	Stem 2	8.126
	CRR073299	Stem 3	5.041
	CRR073300	Leaf 1	102.206
	CRR073301	Leaf 2	56.042
	CRR073302	Leaf 3	31.158
	CRR073303	Juvenile bud 1	81.297
	CRR073304	Juvenile bud 2	80.893
	CRR073305	Juvenile bud 3	4.116
	CRR073306	Third green 1	11.887
	CRR073307	Third green 2	20.243
	CRR073308	Third green 3	14.644
	CRR073309	Second white 1	1.197
	CRR073310	Second white 2	2.216
	CRR073311	Second white 3	2.794
	CRR073312	Silver flowering 1	11.334
	CRR073313	Silver flowering 2	8.680
	CRR073314	Silver flowering 3	5.290
	CRR073315	Gold flowering 1	10.666
	CRR073316	Gold flowering 2	2.668
	CRR073317	Gold flowering 3	7.106
	CRR073318	Tawny withering 1	38.581
	CRR073319	Tawny withering 2	37.039
	CRR073320	Tawny withering 3	56.966