Detail information of GWHGAAZE006898


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011069944.11.78853E-90PREDICTED: protein LSD1-like [Sesamum indicum]
Swissprottr|P94077|LSD1_ARATH6E-69Protein LSD1
trEMBLtr|C6TGF7|C6TGF7_SOYBN8E-90Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G30490.1}
TAIR10AT4G20380.72E-52LSD1 zinc finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3383120133837539-
GWHAAZE00000002mRNA3383120133837539-
GWHAAZE00000002exon3383744033837539-
GWHAAZE00000002exon3383563033835760-
GWHAAZE00000002exon3383421133834330-
GWHAAZE00000002exon3383338633833501-
GWHAAZE00000002exon3383200233832085-
GWHAAZE00000002exon3383183733831908-
GWHAAZE00000002exon3383120133831279-
GWHAAZE00000002five_prime_UTR3383744033837539-
GWHAAZE00000002five_prime_UTR3383575733835760-
GWHAAZE00000002CDS3383563033835756-
GWHAAZE00000002CDS3383421133834330-
GWHAAZE00000002CDS3383338633833501-
GWHAAZE00000002CDS3383200233832085-
GWHAAZE00000002CDS3383183733831908-
GWHAAZE00000002CDS3383124733831279-
GWHAAZE00000002three_prime_UTR3383120133831246-
Transcript Sequence

Network for GWHGAAZE006898

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06943.13zf-LSD17311.70E-10
PF06943.13zf-LSD154785.70E-13
PF06943.13zf-LSD1931178.00E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-LSD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf141.492
SRR3591706second leaf82.737
SRR3591707mature leaf94.639
SRR3591708Shoot apex85.543
SRR3591709Stem173.508
SRR3591710White floral bud225.753
SRR3591711White flower159.822
SRR3591712Green floral bud144.206
SRR3591713Yellow flower234.778
SRP173429 SRR8316895Juvenile bud stage 59.058
SRR8316896Juvenile bud stage 97.084
SRR8316897Juvenile bud stage 49.166
SRR8316894Third green stage 35.047
SRR8316900Third green stage 109.921
SRR8316901Third green stage 123.367
SRR8316898Complete white stage 82.466
SRR8316899Complete white stage 192.890
SRR8316903Complete white stage 132.811
SRR8316902Silver flowering stage87.201
SRR8316904Silver flowering stage100.116
SRR8316905Silver flowering stage59.758
SRR8316906Gold flowering stage 221.987
SRR8316907Gold flowering stage 187.670
SRR8316908Gold flowering stage 202.766
SRP132670SRR6706286Control131.997
SRR6706287Light intensity 50%138.293
SRR6706288Light intensity 20%147.008
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1105.717
CNS0095593Slightly white alabastrum(diploid) 2112.494
CNS0095594Slightly white alabastrum(diploid) 393.789
CNS0095595Whole white alabastrum(diploid) 2121.690
CNS0095596Whole white alabastrum(diploid) 3117.711
CNS0095597Whole white alabastrum(diploid) 4129.661
CNS0095598Silvery flower (diploied) 1109.713
CNS0095599Silvery flower (diploied) 2141.392
CNS0095600Silvery flower (diploied) 3161.512
CNS0095601Golden flower (diploid) 1153.173
CNS0095602Golden flower (diploid) 2177.721
CNS0095603Golden flower (diploid) 3179.958
CNS0095604Slightly white alabastrum(tetraploid) 1114.203
CNS0095605Slightly white alabastrum(tetraploid) 298.040
CNS0095606Slightly white alabastrum(tetraploid) 3137.885
CNS0095607Whole white alabastrum(tetraploid) 1140.339
CNS0095608Whole white alabastrum(tetraploid) 2158.410
CNS0095609Whole white alabastrum(tetraploid) 3131.809
CNS0095610Silvery flower (tetraploid) 1174.608
CNS0095611Silvery flower (tetraploid) 2181.506
CNS0095612Silvery flower (tetraploid) 3220.990
CNS0095613Golden flower (tetraploid) 1205.904
CNS0095614Golden flower (tetraploid) 2189.007
CNS0095615Golden flower (tetraploid) 3262.651
CRA001975CRR073297Stem 1105.141
CRR073298Stem 294.606
CRR073299Stem 3104.487
CRR073300Leaf 1145.948
CRR073301Leaf 2150.326
CRR073302Leaf 3143.777
CRR073303Juvenile bud 1157.371
CRR073304Juvenile bud 2129.662
CRR073305Juvenile bud 3131.373
CRR073306Third green 1187.154
CRR073307Third green 2201.379
CRR073308Third green 3164.974
CRR073309Second white 1201.314
CRR073310Second white 2214.967
CRR073311Second white 3163.843
CRR073312Silver flowering 1213.005
CRR073313Silver flowering 2196.349
CRR073314Silver flowering 3180.781
CRR073315Gold flowering 1128.042
CRR073316Gold flowering 2133.592
CRR073317Gold flowering 3114.848
CRR073318Tawny withering 1173.828
CRR073319Tawny withering 2169.262
CRR073320Tawny withering 3146.729