Detail information of GWHGAAZE006899


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFK49044.11.5087E-117unknown [Lotus japonicus]
Swissprottr|Q0WTY4|VPS2B_ARATH7E-110Vacuolar protein sorting-associated protein 2 homolog 2
trEMBLtr|M1BWM2|M1BWM2_SOLTU9E-119Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400054617}
TAIR10AT5G44560.17E-76SNF7 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3383947433844462-
GWHAAZE00000002mRNA3383947433844462-
GWHAAZE00000002exon3384434833844462-
GWHAAZE00000002exon3384406233844106-
GWHAAZE00000002exon3384250233842536-
GWHAAZE00000002exon3384190133842005-
GWHAAZE00000002exon3384152533841596-
GWHAAZE00000002exon3384136433841435-
GWHAAZE00000002exon3384082733840943-
GWHAAZE00000002exon3384067833840736-
GWHAAZE00000002exon3383947433839781-
GWHAAZE00000002five_prime_UTR3384438833844462-
GWHAAZE00000002CDS3384434833844387-
GWHAAZE00000002CDS3384406233844106-
GWHAAZE00000002CDS3384250233842536-
GWHAAZE00000002CDS3384190133842005-
GWHAAZE00000002CDS3384152533841596-
GWHAAZE00000002CDS3384136433841435-
GWHAAZE00000002CDS3384082733840943-
GWHAAZE00000002CDS3384067833840736-
GWHAAZE00000002CDS3383971833839781-
GWHAAZE00000002three_prime_UTR3383947433839717-
Transcript Sequence

Network for GWHGAAZE006899

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.22Snf7321701.60E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12191CHMP2A Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034biological_processvacuolar transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.165
SRR3591706second leaf21.014
SRR3591707mature leaf3.976
SRR3591708Shoot apex99.829
SRR3591709Stem21.528
SRR3591710White floral bud25.801
SRR3591711White flower21.940
SRR3591712Green floral bud43.538
SRR3591713Yellow flower16.716
SRP173429 SRR8316895Juvenile bud stage 28.512
SRR8316896Juvenile bud stage 30.716
SRR8316897Juvenile bud stage 17.835
SRR8316894Third green stage 12.347
SRR8316900Third green stage 21.038
SRR8316901Third green stage 26.934
SRR8316898Complete white stage 2.403
SRR8316899Complete white stage 23.663
SRR8316903Complete white stage 5.497
SRR8316902Silver flowering stage1.474
SRR8316904Silver flowering stage2.091
SRR8316905Silver flowering stage0.813
SRR8316906Gold flowering stage 1.429
SRR8316907Gold flowering stage 1.767
SRR8316908Gold flowering stage 1.884
SRP132670SRR6706286Control30.894
SRR6706287Light intensity 50%28.131
SRR6706288Light intensity 20%35.229
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.249
CNS0095593Slightly white alabastrum(diploid) 246.852
CNS0095594Slightly white alabastrum(diploid) 340.250
CNS0095595Whole white alabastrum(diploid) 230.806
CNS0095596Whole white alabastrum(diploid) 332.417
CNS0095597Whole white alabastrum(diploid) 429.025
CNS0095598Silvery flower (diploied) 133.976
CNS0095599Silvery flower (diploied) 226.980
CNS0095600Silvery flower (diploied) 311.949
CNS0095601Golden flower (diploid) 131.827
CNS0095602Golden flower (diploid) 219.571
CNS0095603Golden flower (diploid) 316.238
CNS0095604Slightly white alabastrum(tetraploid) 135.480
CNS0095605Slightly white alabastrum(tetraploid) 234.633
CNS0095606Slightly white alabastrum(tetraploid) 346.041
CNS0095607Whole white alabastrum(tetraploid) 133.412
CNS0095608Whole white alabastrum(tetraploid) 220.452
CNS0095609Whole white alabastrum(tetraploid) 318.953
CNS0095610Silvery flower (tetraploid) 16.924
CNS0095611Silvery flower (tetraploid) 211.426
CNS0095612Silvery flower (tetraploid) 35.897
CNS0095613Golden flower (tetraploid) 14.322
CNS0095614Golden flower (tetraploid) 26.084
CNS0095615Golden flower (tetraploid) 31.750
CRA001975CRR073297Stem 148.489
CRR073298Stem 243.096
CRR073299Stem 349.308
CRR073300Leaf 136.927
CRR073301Leaf 240.735
CRR073302Leaf 338.884
CRR073303Juvenile bud 133.942
CRR073304Juvenile bud 214.316
CRR073305Juvenile bud 322.429
CRR073306Third green 14.088
CRR073307Third green 27.565
CRR073308Third green 38.392
CRR073309Second white 13.097
CRR073310Second white 22.190
CRR073311Second white 30.404
CRR073312Silver flowering 10.603
CRR073313Silver flowering 20.827
CRR073314Silver flowering 30.596
CRR073315Gold flowering 122.549
CRR073316Gold flowering 215.535
CRR073317Gold flowering 39.842
CRR073318Tawny withering 140.442
CRR073319Tawny withering 243.436
CRR073320Tawny withering 346.470