Gene detail

Detail information of GWHGAAZE006900

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010655865.1	PREDICTED: alpha-glucosidase-like [Vitis vinifera]
Swissprot	tr\|O04893\|AGLU_SPIOL	Alpha-glucosidase (Precursor)
trEMBL	tr\|F6I3H1\|F6I3H1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61489.1}
TAIR10	AT5G11720.1	Glycosyl hydrolases family 31 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	33860261	33878944	+
GWHAAZE00000002	mRNA	33860261	33878944	+
GWHAAZE00000002	exon	33860261	33860336	+
GWHAAZE00000002	exon	33863446	33863596	+
GWHAAZE00000002	exon	33872558	33873264	+
GWHAAZE00000002	exon	33874430	33874660	+
GWHAAZE00000002	exon	33875700	33876349	+
GWHAAZE00000002	exon	33878051	33878944	+
GWHAAZE00000002	CDS	33860261	33860336	+
GWHAAZE00000002	CDS	33863446	33863596	+
GWHAAZE00000002	CDS	33872558	33873264	+
GWHAAZE00000002	CDS	33874430	33874660	+
GWHAAZE00000002	CDS	33875700	33876349	+
GWHAAZE00000002	CDS	33878051	33878944	+

Transcript Sequence
>GWHTAAZE006908 ATGGTGGTTCGCTGGTGTAGCGACGGTAGAGGTGGTGATGGTGGTTGCGAAATGGGTGGAGATGGTGATAATGGAGCAGCATCTTCAAAAGAACCTGTGGGATACGGTTACGTGATTAGATCTGTGACCCTTCATTCCTCCGGAAAATCGTTGACTTCTTATCTTAAGCTCATCAAGAACTCCTCTGTTTTGGGGCCTGATGTTCAGATTATCAAACTTGATGCCAGTTTTGAGACGAAGGATCGGTTGAGAATTCGATTGACAGATGCCAACCACCGGAGATGGGAAATCCCACCGGAATTCTTACCTCGCCCCACTCTCTCTGATCCCCCCTCTTCACCGAAAATCCCATCCACCAAACCCTGCAAAAAATTCCTCATCACATCCCTGGACTCCGACCTAACCTTAGCCCTCCACAACACCACTCCATTCGGCTTCACAGTAACCCGCCGTTCCACCGGCGACACCCTCTTTGACACCACTCCGACCACCTCCGATCCTGCCACATTCCTCGTCTACAAAAACCAGTACCTCCAGCTCTCCTCTTCGCTTTCCCCAAATCGATCCTCTCTCTACGGCCTGGGCGAGCACACAAGAAAATCGTTCAAATTGAGGGCCAATCAAACCCTAACTTTGTGGAACTCAGATAATTTGAGTTATAATGTGGATATCAATTTATATGGGTCCCATCCTTTTTATATGGATGTTAGGTCCCCAGATTTTCAAGGAAAAGTGCCGGCGGGGAGTAGTCATGGGGTATTGTTGCTCAATAGCAATGGAATGGATGTTGTTTATACTGGGGATAGGATTACTTATAAAGTTATTGGGGGCGTACTTGATTTGTACTTTTTCGCCGGACCTTCGCCTGAGATGGTTATGGAGCAGTATACGGAGCTGATTGGCCGGCCGGCACCAATGCCCTACTGGTCCTTTGGATTACACCAATGCCGATATACTACCAAAGACGTGCATGATCTTGAGGATGTGGTAGCTAGCTATGCGAAAAATAGAATCCCCCTCGAAGCTATGTGGTCGGATATCGATTACATGGATGCATTCAAGGATTTTACCCTTGATCCTACTAATTTCCCTTTGGAAAATATGAAGAAATTTGTCAATAAACTTCACCAAAATGGTCAGAAATATGGCATCATCTTGGATCCTGGGATTAATGTGAATAAGACATATGAAACCTATATAAGAGGAATGAAAGCCGACATATTCATAAAACGCGACGGAATTCCTTACCTGGGCAAAGTGTGGCCTGGACTGGTTTACTTTACTGATTTTGCAAATCCTTCCGCCAGAATTTTCTGGGGAAACGAAATCCAAATTTTCCTAGATCTTCTCCCCGTTGATGGCCTATGGATCGACATGAACGAAATATCCAATATTTTCATGACGTCCCCGCCTACCCCAAAATCTACCCTCGATGACCCGCCCTATAAGATCAATAATTCTGGGGTTCAATGGCCCATTAATGAAAAAACGGTGCCTGCAACGGCCTTACATTTTGGCAATATCACGGAATATGATGCTCATAATCTTTATGGGTTCTTGGAAGCGAAAGCTACTAATGAAGATCTGATCAAAGCGACTCGTAAGAGACCATTTGTACTTTGTAGGTCAACTTTTGTTGGTTCTGGTAAGTATGTGGCACACTGGACCGGTGACAATGCTGCCACGTGGGATGATTTGGCGTATTCAATTCCGAGCATTTTGAATTTTGGAATATTTGGAATTCCGATGGTTGGGGCTGACATATGCGGGTTTGCGGGAAACACAACTGAGGAGCTCTGTGGGCGTTGGATTCAGCTCGGGGCATTCTACCCCTTTGCAAGAGACCACTCCGATAAGAATACTACCCGACAAGAGCTTTATGAGTGGGATTCAGTAGCCGCAACAGCCAGAAAGGTCCTTGGACTCCGGTACCGGTTACTACCCTACTTCTACACGCTTATGTACAAGGCACACACCAAAGGGATCCCCATTGTCCGACCCCTCTTCTTCTCGTTCCCTCAAGACACTGCAACTTACGATATCAGCTCTCAGTTCCTCCTTGGCAAAGGAGTGATGGTCTCGCCAGTGCTTCGCCCCGGAGCCACCTCAGTCACCGCCTACTTCCCCTCGGGAAACTGGTTCAACCTCTTCTGCTACTCGAATTCGTTGAGCGTAAAAGGCGGAAAATACATTAAACTGGATGCACCACAGGACCACATAAATGTGCACGTCCATGAAGGAAACATAGTGTCGATGCAAGGAGAAGCAATGACGACCAGGGCGGCGAGAAAGACACCGTTTGAGCTAGTGGTGGTGGTCGATGGCAGTGGAAGTAGCTACGGGGAGGTGTTTTTGGACGACGGGGAGGAGGTGGAAATGGGAGGAGAGGGGCAGAACTGGAGTCTGGTGAGATTTTACGGTGGTATTGTTGGTGGTGAATTGGTGGTTAGGTCCGAGGTTGTTAATGGAGCGTTTGCTTCGAATGAGAAGTGGGTGATTGAGAAGGTGACTATATTGGGGTTGAAGAAGAAGGTTATAAGAATGGTGGGTTCCAAGTTAAATGTTAATTTGGGGATTAGTACAGATGGTAATGGCTTTGTTAGGGCGGAGATTTTGGGCCTCTCACTGCTGATAGGGGAGGAGTTTAAATTGAAGCTGAAGCTTGAGAGGTTGAATTATGGAGAGGTGGATTTAGTGGGATTTAAGTAA

Network for GWHGAAZE006900

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16863.6	NtCtMGAM_N	51	184	7.90E-30
PF13802.7	Gal_mutarotas_2	190	261	6.80E-11
PF01055.27	Glyco_hydro_31	282	750	3.50E-154

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01187	malZ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.282
	SRR3591706	second leaf	3.917
	SRR3591707	mature leaf	3.909
	SRR3591708	Shoot apex	6.126
	SRR3591709	Stem	5.762
	SRR3591710	White floral bud	11.482
	SRR3591711	White flower	9.512
	SRR3591712	Green floral bud	5.545
	SRR3591713	Yellow flower	14.874
SRP173429	SRR8316895	Juvenile bud stage	2.604
	SRR8316896	Juvenile bud stage	4.419
	SRR8316897	Juvenile bud stage	1.569
	SRR8316894	Third green stage	1.773
	SRR8316900	Third green stage	4.479
	SRR8316901	Third green stage	4.317
	SRR8316898	Complete white stage	3.003
	SRR8316899	Complete white stage	4.782
	SRR8316903	Complete white stage	5.903
	SRR8316902	Silver flowering stage	2.125
	SRR8316904	Silver flowering stage	3.644
	SRR8316905	Silver flowering stage	1.960
	SRR8316906	Gold flowering stage	7.066
	SRR8316907	Gold flowering stage	5.510
	SRR8316908	Gold flowering stage	4.783
SRP132670	SRR6706286	Control	5.146
	SRR6706287	Light intensity 50%	5.349
	SRR6706288	Light intensity 20%	4.843
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.681
	CNS0095593	Slightly white alabastrum(diploid) 2	3.200
	CNS0095594	Slightly white alabastrum(diploid) 3	3.662
	CNS0095595	Whole white alabastrum(diploid) 2	2.661
	CNS0095596	Whole white alabastrum(diploid) 3	1.998
	CNS0095597	Whole white alabastrum(diploid) 4	2.425
	CNS0095598	Silvery flower (diploied) 1	4.617
	CNS0095599	Silvery flower (diploied) 2	2.764
	CNS0095600	Silvery flower (diploied) 3	9.704
	CNS0095601	Golden flower (diploid) 1	5.506
	CNS0095602	Golden flower (diploid) 2	9.490
	CNS0095603	Golden flower (diploid) 3	9.584
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.164
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.335
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.123
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.737
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.649
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.470
	CNS0095610	Silvery flower (tetraploid) 1	18.882
	CNS0095611	Silvery flower (tetraploid) 2	20.351
	CNS0095612	Silvery flower (tetraploid) 3	13.037
	CNS0095613	Golden flower (tetraploid) 1	19.443
	CNS0095614	Golden flower (tetraploid) 2	24.013
	CNS0095615	Golden flower (tetraploid) 3	39.131
CRA001975	CRR073297	Stem 1	4.446
	CRR073298	Stem 2	4.537
	CRR073299	Stem 3	2.630
	CRR073300	Leaf 1	4.238
	CRR073301	Leaf 2	4.361
	CRR073302	Leaf 3	1.959
	CRR073303	Juvenile bud 1	2.383
	CRR073304	Juvenile bud 2	0.980
	CRR073305	Juvenile bud 3	2.699
	CRR073306	Third green 1	1.228
	CRR073307	Third green 2	1.333
	CRR073308	Third green 3	1.736
	CRR073309	Second white 1	1.209
	CRR073310	Second white 2	1.803
	CRR073311	Second white 3	1.906
	CRR073312	Silver flowering 1	1.625
	CRR073313	Silver flowering 2	1.428
	CRR073314	Silver flowering 3	1.708
	CRR073315	Gold flowering 1	1.329
	CRR073316	Gold flowering 2	1.494
	CRR073317	Gold flowering 3	0.634
	CRR073318	Tawny withering 1	3.314
	CRR073319	Tawny withering 2	2.978
	CRR073320	Tawny withering 3	2.823