Gene detail

Detail information of GWHGAAZE006903

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007211340.1	0	hypothetical protein PRUPE_ppa001152mg [Prunus persica]
Swissprot	tr\|C0LGH2\|Y1561_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g56130 (Precursor)
trEMBL	tr\|M5WFP6\|M5WFP6_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ12539.1}
TAIR10	AT1G56145.2	5E-143	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	33908270	33915039	+
GWHAAZE00000002	mRNA	33908270	33915039	+
GWHAAZE00000002	exon	33908270	33908340	+
GWHAAZE00000002	exon	33908425	33908496	+
GWHAAZE00000002	exon	33908628	33908699	+
GWHAAZE00000002	exon	33908780	33908851	+
GWHAAZE00000002	exon	33908958	33909023	+
GWHAAZE00000002	exon	33909382	33909459	+
GWHAAZE00000002	exon	33909720	33909764	+
GWHAAZE00000002	exon	33909984	33910045	+
GWHAAZE00000002	exon	33910679	33911061	+
GWHAAZE00000002	exon	33912259	33912454	+
GWHAAZE00000002	exon	33913755	33913901	+
GWHAAZE00000002	exon	33914281	33914399	+
GWHAAZE00000002	exon	33914809	33915039	+
GWHAAZE00000002	CDS	33908270	33908340	+
GWHAAZE00000002	CDS	33908425	33908496	+
GWHAAZE00000002	CDS	33908628	33908699	+
GWHAAZE00000002	CDS	33908780	33908851	+
GWHAAZE00000002	CDS	33908958	33909023	+
GWHAAZE00000002	CDS	33909382	33909459	+
GWHAAZE00000002	CDS	33909720	33909764	+
GWHAAZE00000002	CDS	33909984	33910045	+
GWHAAZE00000002	CDS	33910679	33911061	+
GWHAAZE00000002	CDS	33912259	33912454	+
GWHAAZE00000002	CDS	33913755	33913901	+
GWHAAZE00000002	CDS	33914281	33914399	+
GWHAAZE00000002	CDS	33914809	33915039	+

Transcript Sequence
>GWHTAAZE006911 CGAATTCAAGGGAACAATTTTGAAGGACCAATACCATCTAGTTTTTCTAATTTGACCTCACTGACTTCGCTGAGAATTACCGATTTGCATAATGTGAGTTCCTCTCTTGATTTTATCAAGAATATGAGGAACTTATCAGACTTAATTCTGAGAAATGCCTTAATATCAGATACTCTTCCATCGGATATTGATAAATATCAACTTTTAAGTACACTGGATTTGAGTTTTAACAACATTACTGGTCCGTTACCAAGCAGATTAATGAATATGACTGCTCTCACTTCCTTGTTTCTTGGAAATAATAGCCTGTCTGGCCCACTTCTTCCCCAGATGAATGACAGACTTCAGAATATAGATTTCTCCTACAATGAACTATCTGGAACTTTTCCTCAATGGGTATATCCTTCATGGCTGAAACCAAATTTACAATTGAATTTAGTGGGAAACAATTTCAGATTTGATAGCTCAAACATAAGTTCTTTTCCAGGATTACATTGTCTTCAGAGAAACTTCCCTTGCAATAGGAACCCTCCACCTAATGCCGACTTCTCAATCAATTGTGGTGGGCCCGCGGTGAGATCCAGAGATGGCACACTCTACGAGACTGAAAATTCTACTGCCCTTGGTCCAGCAGCTTATTATGTAACCCAAGAAAAATGGGCAGTAAGCAATGTTGGTGTAGTTATTGACAGGGAGAATCCAACATATATTACAACCACCAATGTGCAAGTCGCAAACACCATCACGCCGGAGCTTTTCCGCACTTCGAGGACCTCCCCGGGTTCCCTTAGATACTATGGTTTGGGACTACAAAATAGGACTTACACTGTAAGCCTATTCTTTGCTGAAACTCTTATTAGTGATAGGAGCACGCAGACTTGGCGGAGTCGTGGGAGGCGTGTTTTTGATATTTACATTCAGGGTATTCGCAGAGAGAAGGACTTTGATATATCGAAGGAGGCAGGCGGGGTTAACAGAGCAATCCAGAAGAATTACCAAGTTACTGTAACCCAAAATTATCTTGAAATTCATCTTTTTTGGGCCGGGAAGGGGACTTGCTGCATCCCTAGGCATGGCGATTATGGACCGTTGATCTCAGCCCTTAGTGTCTCTTCAGGTAGTAGAAGTAGTGCTGGTGGGAGCAAGAAGAGCAGGACTGGGTTGATTGTTGGTATTTCAGTTGCTGGTGGAGTTCTCAGCCTAACCCTTTTAATTCTTCTTCTGTACTTCAAAAGAAGGGGATCAAAACGATATGAAGAGGAAGAGATTCTTGGACTTGGCCCCAAACCAAACACTTACAGTTATTCTGAGTTGAGAACTGCAACCGATGATTTCAATCCTTCAAATAAGCTTGGAGAGGGGGGATTCGGACCTGTTTACAAGGGAAAATTAAATGATGGAAGGATAGTAGCTGTGAAGCAACTCTCAGTAGCATCACACCAAGGAAAGAATCAATTCATAACCGAGATTTCTACAATTTCTGCCGTGCAACACTGGAATCTAGTCAAATTGTATGGATTTTGTGCTGAAGGACCTAAGCGTCTTTTGGTTTACGAGTACCTTGAGAACAGGAGCCTTGATCAGTCACTCTTTGGTATGAAAATGTTGAAGTGA

Network for GWHGAAZE006903

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11721.9	Malectin	183	368	7.30E-41
PF00069.26	Pkinase	447	530	7.30E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.212
	SRR3591706	second leaf	5.299
	SRR3591707	mature leaf	6.228
	SRR3591708	Shoot apex	11.249
	SRR3591709	Stem	13.434
	SRR3591710	White floral bud	21.704
	SRR3591711	White flower	16.334
	SRR3591712	Green floral bud	21.983
	SRR3591713	Yellow flower	12.777
SRP173429	SRR8316895	Juvenile bud stage	20.181
	SRR8316896	Juvenile bud stage	36.348
	SRR8316897	Juvenile bud stage	18.742
	SRR8316894	Third green stage	18.096
	SRR8316900	Third green stage	36.740
	SRR8316901	Third green stage	38.379
	SRR8316898	Complete white stage	13.760
	SRR8316899	Complete white stage	51.369
	SRR8316903	Complete white stage	33.764
	SRR8316902	Silver flowering stage	18.989
	SRR8316904	Silver flowering stage	27.800
	SRR8316905	Silver flowering stage	12.520
	SRR8316906	Gold flowering stage	48.361
	SRR8316907	Gold flowering stage	33.454
	SRR8316908	Gold flowering stage	40.199
SRP132670	SRR6706286	Control	33.590
	SRR6706287	Light intensity 50%	33.222
	SRR6706288	Light intensity 20%	33.413
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.752
	CNS0095593	Slightly white alabastrum(diploid) 2	9.688
	CNS0095594	Slightly white alabastrum(diploid) 3	11.416
	CNS0095595	Whole white alabastrum(diploid) 2	9.701
	CNS0095596	Whole white alabastrum(diploid) 3	7.436
	CNS0095597	Whole white alabastrum(diploid) 4	8.828
	CNS0095598	Silvery flower (diploied) 1	12.746
	CNS0095599	Silvery flower (diploied) 2	11.153
	CNS0095600	Silvery flower (diploied) 3	36.083
	CNS0095601	Golden flower (diploid) 1	11.622
	CNS0095602	Golden flower (diploid) 2	30.676
	CNS0095603	Golden flower (diploid) 3	31.619
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.524
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.237
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.794
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.390
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.890
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.464
	CNS0095610	Silvery flower (tetraploid) 1	42.622
	CNS0095611	Silvery flower (tetraploid) 2	31.512
	CNS0095612	Silvery flower (tetraploid) 3	31.441
	CNS0095613	Golden flower (tetraploid) 1	21.975
	CNS0095614	Golden flower (tetraploid) 2	44.581
	CNS0095615	Golden flower (tetraploid) 3	37.033
CRA001975	CRR073297	Stem 1	33.028
	CRR073298	Stem 2	29.914
	CRR073299	Stem 3	12.208
	CRR073300	Leaf 1	40.445
	CRR073301	Leaf 2	29.075
	CRR073302	Leaf 3	20.407
	CRR073303	Juvenile bud 1	16.367
	CRR073304	Juvenile bud 2	12.618
	CRR073305	Juvenile bud 3	25.290
	CRR073306	Third green 1	5.484
	CRR073307	Third green 2	4.726
	CRR073308	Third green 3	8.605
	CRR073309	Second white 1	8.197
	CRR073310	Second white 2	7.654
	CRR073311	Second white 3	8.926
	CRR073312	Silver flowering 1	9.527
	CRR073313	Silver flowering 2	10.588
	CRR073314	Silver flowering 3	9.190
	CRR073315	Gold flowering 1	3.405
	CRR073316	Gold flowering 2	8.305
	CRR073317	Gold flowering 3	4.022
	CRR073318	Tawny withering 1	8.113
	CRR073319	Tawny withering 2	11.749
	CRR073320	Tawny withering 3	10.572