Detail information of GWHGAAZE006906


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011096876.10PREDICTED: CTP synthase-like isoform X2 [Sesamum indicum]
trEMBLtr|A0A068U755|A0A068U755_COFCA0CTP synthase {ECO:0000256|RuleBase:RU810713}
TAIR10AT1G30820.10CTP synthase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3397053133978418-
GWHAAZE00000002mRNA3397053133978418-
GWHAAZE00000002exon3397053133970826-
GWHAAZE00000002exon3397184033971933-
GWHAAZE00000002exon3397204833972128-
GWHAAZE00000002exon3397263933972687-
GWHAAZE00000002exon3397324033973325-
GWHAAZE00000002exon3397343033973657-
GWHAAZE00000002exon3397422833974266-
GWHAAZE00000002exon3397435633974445-
GWHAAZE00000002exon3397515133975213-
GWHAAZE00000002exon3397530933975378-
GWHAAZE00000002exon3397599433976040-
GWHAAZE00000002exon3397613133976193-
GWHAAZE00000002exon3397632533976375-
GWHAAZE00000002exon3397672533976789-
GWHAAZE00000002exon3397691433976970-
GWHAAZE00000002exon3397705833977175-
GWHAAZE00000002exon3397745033977500-
GWHAAZE00000002exon3397829933978418-
GWHAAZE00000002CDS3397829933978418-
GWHAAZE00000002CDS3397745033977500-
GWHAAZE00000002CDS3397705833977175-
GWHAAZE00000002CDS3397691433976970-
GWHAAZE00000002CDS3397672533976789-
GWHAAZE00000002CDS3397632533976375-
GWHAAZE00000002CDS3397613133976193-
GWHAAZE00000002CDS3397599433976040-
GWHAAZE00000002CDS3397530933975378-
GWHAAZE00000002CDS3397515133975213-
GWHAAZE00000002CDS3397435633974445-
GWHAAZE00000002CDS3397422833974266-
GWHAAZE00000002CDS3397343033973657-
GWHAAZE00000002CDS3397324033973325-
GWHAAZE00000002CDS3397263933972687-
GWHAAZE00000002CDS3397204833972128-
GWHAAZE00000002CDS3397184033971933-
GWHAAZE00000002CDS3397065733970826-
GWHAAZE00000002three_prime_UTR3397053133970656-
Transcript Sequence

Network for GWHGAAZE006906

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06418.15CTP_synth_N411373.90E-34
PF00117.29GATase2264617.70E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01937pyrG, CTPS Metabolic pathways map01100
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0006221biological_processpyrimidine nucleotide biosynthetic process
GO:0006241biological_processCTP biosynthetic process
GO:0003883molecular_functionCTP synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.993
SRR3591706second leaf31.620
SRR3591707mature leaf13.996
SRR3591708Shoot apex64.322
SRR3591709Stem15.624
SRR3591710White floral bud16.975
SRR3591711White flower15.873
SRR3591712Green floral bud25.388
SRR3591713Yellow flower47.743
SRP173429 SRR8316895Juvenile bud stage 28.653
SRR8316896Juvenile bud stage 67.714
SRR8316897Juvenile bud stage 26.001
SRR8316894Third green stage 19.631
SRR8316900Third green stage 18.140
SRR8316901Third green stage 22.666
SRR8316898Complete white stage 4.171
SRR8316899Complete white stage 21.559
SRR8316903Complete white stage 8.470
SRR8316902Silver flowering stage5.244
SRR8316904Silver flowering stage8.361
SRR8316905Silver flowering stage1.804
SRR8316906Gold flowering stage 13.382
SRR8316907Gold flowering stage 10.630
SRR8316908Gold flowering stage 14.596
SRP132670SRR6706286Control18.268
SRR6706287Light intensity 50%20.643
SRR6706288Light intensity 20%17.558
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.498
CNS0095593Slightly white alabastrum(diploid) 222.197
CNS0095594Slightly white alabastrum(diploid) 339.226
CNS0095595Whole white alabastrum(diploid) 220.231
CNS0095596Whole white alabastrum(diploid) 315.951
CNS0095597Whole white alabastrum(diploid) 416.623
CNS0095598Silvery flower (diploied) 111.238
CNS0095599Silvery flower (diploied) 211.811
CNS0095600Silvery flower (diploied) 36.694
CNS0095601Golden flower (diploid) 17.689
CNS0095602Golden flower (diploid) 29.892
CNS0095603Golden flower (diploid) 39.056
CNS0095604Slightly white alabastrum(tetraploid) 118.025
CNS0095605Slightly white alabastrum(tetraploid) 215.313
CNS0095606Slightly white alabastrum(tetraploid) 328.658
CNS0095607Whole white alabastrum(tetraploid) 111.382
CNS0095608Whole white alabastrum(tetraploid) 28.310
CNS0095609Whole white alabastrum(tetraploid) 320.405
CNS0095610Silvery flower (tetraploid) 16.861
CNS0095611Silvery flower (tetraploid) 25.277
CNS0095612Silvery flower (tetraploid) 36.329
CNS0095613Golden flower (tetraploid) 15.724
CNS0095614Golden flower (tetraploid) 26.532
CNS0095615Golden flower (tetraploid) 333.993
CRA001975CRR073297Stem 185.747
CRR073298Stem 279.542
CRR073299Stem 379.233
CRR073300Leaf 124.408
CRR073301Leaf 226.177
CRR073302Leaf 317.936
CRR073303Juvenile bud 111.547
CRR073304Juvenile bud 29.421
CRR073305Juvenile bud 310.550
CRR073306Third green 13.077
CRR073307Third green 25.045
CRR073308Third green 37.066
CRR073309Second white 14.970
CRR073310Second white 24.066
CRR073311Second white 33.334
CRR073312Silver flowering 16.505
CRR073313Silver flowering 27.241
CRR073314Silver flowering 39.154
CRR073315Gold flowering 14.391
CRR073316Gold flowering 28.279
CRR073317Gold flowering 36.628
CRR073318Tawny withering 112.329
CRR073319Tawny withering 213.754
CRR073320Tawny withering 38.638