Gene detail

Detail information of GWHGAAZE006908

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO77144.1	6.672E-146	hypothetical protein CISIN_1g020327mg [Citrus sinensis]
Swissprot	tr\|Q8LGI3\|ARC2A_ARATH	4E-131	Actin-related protein 2/3 complex subunit 2A
trEMBL	tr\|A0A067GC24\|A0A067GC24_CITSI	2E-146	Uncharacterized protein {ECO:0000313\|EMBL:KDO77144.1}
TAIR10	AT1G30825.1	3E-97	Arp2/3 complex, 34 kD subunit p34-Arc

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	34049178	34055300	+
GWHAAZE00000002	mRNA	34049178	34055300	+
GWHAAZE00000002	exon	34049178	34049446	+
GWHAAZE00000002	exon	34049633	34049699	+
GWHAAZE00000002	exon	34049878	34050085	+
GWHAAZE00000002	exon	34053314	34053483	+
GWHAAZE00000002	exon	34053920	34053997	+
GWHAAZE00000002	exon	34054560	34054692	+
GWHAAZE00000002	exon	34054778	34054869	+
GWHAAZE00000002	exon	34055283	34055300	+
GWHAAZE00000002	CDS	34049178	34049446	+
GWHAAZE00000002	CDS	34049633	34049699	+
GWHAAZE00000002	CDS	34049878	34050085	+
GWHAAZE00000002	CDS	34053314	34053483	+
GWHAAZE00000002	CDS	34053920	34053997	+
GWHAAZE00000002	CDS	34054560	34054692	+
GWHAAZE00000002	CDS	34054778	34054869	+
GWHAAZE00000002	CDS	34055283	34055300	+

Transcript Sequence
>GWHTAAZE006916 ATGAATACTGCTGGACCGCTGGCTTATCCTTCTGGGGTTTGTTTTCGTATAGTTCCTCATGAAACTGCCTTTTTGTATCCACTTCGCTTCTGTTCCTATCTTTTTTGGTACAGCATACTTTGTGGCCATGTGTGTCTTGTGGTGATGTTTTATTATAATAACAAAATCAACCTTCTCTCCCCCTATGCTTCGGGCATAATAAAGAAAACGCATATTGCCAGGGGTTGGGATTGGGTGAAGCAGGCTGACTATCATTCAGCTCCTTACAGTCTTGAAAAAGGAGTCGAACTTGATTGCAATTGGGTAGAGTTTGATGATGTCCGTTACCATATTCAGGTGACAATGAAGAATCCACACCTTCTGCAACTATCAGTATCATTACCCCCACCGCCTCCAGAAACTATTTTCTCTGGGGGGCTTCCTCTCGGAGCCATAGAAGCTATGAAAGCGGCATACCCAGCAGTCATACAAATTCTTGATCCACCAAGAGACGGCTTTAACCTCACAGTGAAACTGAACTTGTCAAAACTTCCACCAGATGAAGGGTACAGAGAGGCTCTTTTGGTAAAGATTGCATCCGTTAGGGAAGTGGTATTAGGTGCCCCATTAAGACTAGTTTTAAAACATCTTGCTTCGAGAACAGTTGCTCCGGATATAGGTAGGCTTGTTGCCCTTGTGCATCGGCCAAAGGAGTCCTTTTTCCTTGTTCCTCAGGTAGACAAGGTGATAGTGGTTTTTCCTATGAGATTCAATGATTCTGTAGATACTATTCTTGCAACTTCTTTCCTACAGGAATTTGTTGAAGCAAGGCGTACTGCTGGACTCAACAACGCCCCTCCTTGTTCATGGTCAACTTCTCCACCTCAAGAACTGAGGGAGGTTCCTGTTGAAGCAATTACTGCAAATGCTGGATTTGTTACTTTTGTCATTTACCCACGTCATGTAGATGGCAAAAAACTGGACAAAACTGTTTGGAATTTATCAACATTTCATGCGTATGTGAGTTATCATGTTAAGGAAACTTTCTTAAATTAA

Network for GWHGAAZE006908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04045.15	P34-Arc	143	339	1.10E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05758	ARPC2	Endocytosis	map04144
		Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0030041	biological_process	actin filament polymerization
GO:0030833	biological_process	regulation of actin filament polymerization
GO:0034314	biological_process	Arp2/3 complex-mediated actin nucleation
GO:0005885	cellular_component	Arp2/3 protein complex
GO:0015629	cellular_component	actin cytoskeleton

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.604
	SRR3591706	second leaf	14.486
	SRR3591707	mature leaf	11.454
	SRR3591708	Shoot apex	12.139
	SRR3591709	Stem	12.544
	SRR3591710	White floral bud	11.570
	SRR3591711	White flower	14.434
	SRR3591712	Green floral bud	18.977
	SRR3591713	Yellow flower	13.911
SRP173429	SRR8316895	Juvenile bud stage	11.135
	SRR8316896	Juvenile bud stage	14.412
	SRR8316897	Juvenile bud stage	5.634
	SRR8316894	Third green stage	7.969
	SRR8316900	Third green stage	21.844
	SRR8316901	Third green stage	19.422
	SRR8316898	Complete white stage	8.143
	SRR8316899	Complete white stage	23.519
	SRR8316903	Complete white stage	14.098
	SRR8316902	Silver flowering stage	3.812
	SRR8316904	Silver flowering stage	7.957
	SRR8316905	Silver flowering stage	3.702
	SRR8316906	Gold flowering stage	12.123
	SRR8316907	Gold flowering stage	11.106
	SRR8316908	Gold flowering stage	11.640
SRP132670	SRR6706286	Control	18.083
	SRR6706287	Light intensity 50%	17.432
	SRR6706288	Light intensity 20%	20.851
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.699
	CNS0095593	Slightly white alabastrum(diploid) 2	9.725
	CNS0095594	Slightly white alabastrum(diploid) 3	8.392
	CNS0095595	Whole white alabastrum(diploid) 2	8.575
	CNS0095596	Whole white alabastrum(diploid) 3	9.158
	CNS0095597	Whole white alabastrum(diploid) 4	7.771
	CNS0095598	Silvery flower (diploied) 1	11.331
	CNS0095599	Silvery flower (diploied) 2	7.987
	CNS0095600	Silvery flower (diploied) 3	17.833
	CNS0095601	Golden flower (diploid) 1	8.174
	CNS0095602	Golden flower (diploid) 2	17.516
	CNS0095603	Golden flower (diploid) 3	16.587
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.173
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.804
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.019
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.301
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.708
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.538
	CNS0095610	Silvery flower (tetraploid) 1	11.809
	CNS0095611	Silvery flower (tetraploid) 2	17.101
	CNS0095612	Silvery flower (tetraploid) 3	12.073
	CNS0095613	Golden flower (tetraploid) 1	9.885
	CNS0095614	Golden flower (tetraploid) 2	14.065
	CNS0095615	Golden flower (tetraploid) 3	13.682
CRA001975	CRR073297	Stem 1	14.172
	CRR073298	Stem 2	14.648
	CRR073299	Stem 3	17.438
	CRR073300	Leaf 1	14.570
	CRR073301	Leaf 2	13.710
	CRR073302	Leaf 3	13.351
	CRR073303	Juvenile bud 1	15.040
	CRR073304	Juvenile bud 2	13.605
	CRR073305	Juvenile bud 3	12.290
	CRR073306	Third green 1	4.894
	CRR073307	Third green 2	4.932
	CRR073308	Third green 3	4.600
	CRR073309	Second white 1	5.183
	CRR073310	Second white 2	6.441
	CRR073311	Second white 3	4.978
	CRR073312	Silver flowering 1	5.882
	CRR073313	Silver flowering 2	7.543
	CRR073314	Silver flowering 3	3.367
	CRR073315	Gold flowering 1	4.862
	CRR073316	Gold flowering 2	7.390
	CRR073317	Gold flowering 3	6.243
	CRR073318	Tawny withering 1	11.067
	CRR073319	Tawny withering 2	8.050
	CRR073320	Tawny withering 3	12.010