Gene detail

Detail information of GWHGAAZE006932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270417.1	0	PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Vitis vinifera]
Swissprot	tr\|Q94K73\|SYFM_ARATH	0	Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|D7UBM0\|D7UBM0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40135.3}
TAIR10	AT3G58140.1	6E-178	phenylalanyl-tRNA synthetase class IIc family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	34360483	34371793	+
GWHAAZE00000002	mRNA	34360483	34371793	+
GWHAAZE00000002	exon	34360483	34360648	+
GWHAAZE00000002	exon	34361088	34361411	+
GWHAAZE00000002	exon	34361790	34361834	+
GWHAAZE00000002	exon	34362417	34362461	+
GWHAAZE00000002	exon	34362552	34362623	+
GWHAAZE00000002	exon	34362896	34363152	+
GWHAAZE00000002	exon	34366381	34366692	+
GWHAAZE00000002	exon	34367182	34367299	+
GWHAAZE00000002	exon	34367913	34367989	+
GWHAAZE00000002	exon	34369707	34369886	+
GWHAAZE00000002	exon	34370002	34370046	+
GWHAAZE00000002	exon	34370328	34370432	+
GWHAAZE00000002	exon	34371422	34371793	+
GWHAAZE00000002	CDS	34360483	34360648	+
GWHAAZE00000002	CDS	34361088	34361411	+
GWHAAZE00000002	CDS	34361790	34361834	+
GWHAAZE00000002	CDS	34362417	34362461	+
GWHAAZE00000002	CDS	34362552	34362623	+
GWHAAZE00000002	CDS	34362896	34363152	+
GWHAAZE00000002	CDS	34366381	34366692	+
GWHAAZE00000002	CDS	34367182	34367299	+
GWHAAZE00000002	CDS	34367913	34367989	+
GWHAAZE00000002	CDS	34369707	34369886	+
GWHAAZE00000002	CDS	34370002	34370046	+
GWHAAZE00000002	CDS	34370328	34370432	+
GWHAAZE00000002	CDS	34371422	34371544	+
GWHAAZE00000002	three_prime_UTR	34371545	34371793	+

Transcript Sequence
>GWHTAAZE006940 ATGAGATCGAGCTTCGTTCGTCGGAGTGGAGGGAGGAGAGCTCGCGGAATGGAGGGATTGAGAGCGAGCTTTGTGTTCGTGAGCTTCGCGGAATGGGGGGAGAGAGAGCTTGAGTACCTCGTCGGAGTGGAGAGAGAATCTGTTGCCTGCAATTTGAAGGTCGGAGTTTTATCATAAATAAAAATAAAAATAAAAATAAAAATATCATCATATTCAAAATGTACGTCCCTTCGCAAAACCTCAGCTATTGCTCATTTCCACCGTAGGGTGAAGATGATGGCTGTCCCATTTGCTGCTCAATCAACTCTCTTCTCAAAACCCTCGTTTTTCCTACATAGAAATGGAACCTTTAGAACTCTAGCCTTCTCCTTCTCAATCTCTTCCTTCTCCACCTCCACTGCTCTTTCCGCAGATAAGATTCGCTCTAAGAAGTGGAGACAGCCAGTGCTTTCAGCTCTTGAGCTGGGCGGAGTTCAAATTGCTAAAGACGAGTATTCAGTTCTCAAGCTTGGTGGATTTCAAATTGCTAAGGACGAGTATTTAGTTTTCGAGCTCGGTGGAGTTCAAATTGCTGAAGACGTCGGTGAAAATGAAATTGATTTTGACTGGGACTTCCGATTTGTTGTTAGAGTATGGCAATTGACATTCCATAGAACTTTTAACTGCTATATTAGATTATTTTCTGTTGGTTTACTAATTTTGGTAATTGGGTTTGTAGATGTGGTGAGGGATGACCCAACAAACAATGTCCCAGATTCAATATTTTCGAAACTTGGAATGCAACTTCATAGAAGGGATCAGCATCCTCTCGGGATTTTGAAGAATGCAATATTTGACTATTTTGACACCAATTATTCTAACAAATTTGACAAGTTTGATAATCTCTGTCCAATTGTTTCTACAAAAGCGTCTTCTGGGAATCTCTTCTTCCTCTCTCTCTCTCTCTCTCTCCCTTTTTCCATTTGTTACGTGCATTCTGTGCATTATTTTTATGGTCAATCCTTTTTCTTACAGAACTTTGATGATGTGTTGGTACCTGCCGATCATGTAAGTAGAAGCTATAACGACACATACTACATTGACTCACAAACTGTCTTGAGGTGCCACACTAGTGCACATCAGGCTGAGCTATTGAGGAAGGGACACACTCATTTCCTTGTTACTGGAGATGTTTACCGTAGAGATTCAATTGATTCAACTCATTATCCTGTATTTCATCAGATGGAAGGGGTTCGAGTTTTTAGTCCTGATGATTGGGAGGCATCAGGGAAGGATGGCACACAATATGCTGCGGAAGATTTAAAGAAATGTCTCGAGGGTTTGGCTCGTCACTTATTTGGTGCCGTGGAAATGCGCTGGATTGACACTTATTTTCCATTTACCAATCCATCATTTGAACTTGAGATATATTTTCAGGAGAAGTGGCTGGAAGTTCTGGGTTGCGGGGTGACAGAACAGGAGATACTAAAAAGAAGTGGCAAAACAGATAATGTTGCTTGGGCTTTTGGACTTGGCTTGGAGCGTTTAGCTATGGTCCTCTTTGACATACCCGATATTCGACTCTTCTGGACTACTGATGAACGCTTCACTTCTCAATTTTCTAAAGGCCAACTTGGGGTAAAGTTCAAGCCTTTCTCTAAGTATCCTCCTTGTTTCAAAGACATGAGTTTCTGGATCAGTGATTCATTCACCGAAAACAACCTTTGTGAAATTGTCAGAGGAGTTGCTGCAGATCTTGTCGAAGAGGTGCAATTGATCGACAACTTCACCAACAAGAAAGGAATGACGAGCCATTGTTATAGGATAGCTTATCGGTCCATGGAGCGTTCTCTTACAGACGATGAAATAAACGAGTTACAGGTATTTTAATAAGAAAATCTATATGCACCAGTACTTTGTGTTATATTCACGTGTCTACGTGTATGCATACATTAATATGTGTGTGTATATATATATATTAAGTTCTAACTTTTGAATTTGGTTATGATTGTGGGTACAGTGGAATGTGCGAGAGCAGGTGCAGAACAAGTTGAATGTTGTTCTAAGATGAGATTCTTTCTGTGCCTTCGCAGCAAATTTTCCGACTTTCATCTTGTAAATTTCTTGCCTCCCCATTAA

Network for GWHGAAZE006932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01409.21	tRNA-synt_2d	337	532	1.50E-48
PF03147.15	FDX-ACB	545	618	1.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01889	FARSA, pheS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0043039	biological_process	tRNA aminoacylation
GO:0000049	molecular_function	tRNA binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.393
	SRR3591706	second leaf	54.733
	SRR3591707	mature leaf	34.606
	SRR3591708	Shoot apex	51.393
	SRR3591709	Stem	21.803
	SRR3591710	White floral bud	24.702
	SRR3591711	White flower	30.600
	SRR3591712	Green floral bud	36.315
	SRR3591713	Yellow flower	33.751
SRP173429	SRR8316895	Juvenile bud stage	25.484
	SRR8316896	Juvenile bud stage	33.033
	SRR8316897	Juvenile bud stage	17.788
	SRR8316894	Third green stage	14.876
	SRR8316900	Third green stage	47.310
	SRR8316901	Third green stage	38.266
	SRR8316898	Complete white stage	15.084
	SRR8316899	Complete white stage	53.176
	SRR8316903	Complete white stage	19.544
	SRR8316902	Silver flowering stage	11.144
	SRR8316904	Silver flowering stage	17.091
	SRR8316905	Silver flowering stage	7.465
	SRR8316906	Gold flowering stage	34.968
	SRR8316907	Gold flowering stage	36.884
	SRR8316908	Gold flowering stage	36.044
SRP132670	SRR6706286	Control	35.089
	SRR6706287	Light intensity 50%	35.834
	SRR6706288	Light intensity 20%	40.877
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.744
	CNS0095593	Slightly white alabastrum(diploid) 2	21.777
	CNS0095594	Slightly white alabastrum(diploid) 3	21.272
	CNS0095595	Whole white alabastrum(diploid) 2	22.850
	CNS0095596	Whole white alabastrum(diploid) 3	24.140
	CNS0095597	Whole white alabastrum(diploid) 4	19.069
	CNS0095598	Silvery flower (diploied) 1	26.702
	CNS0095599	Silvery flower (diploied) 2	29.875
	CNS0095600	Silvery flower (diploied) 3	34.358
	CNS0095601	Golden flower (diploid) 1	26.563
	CNS0095602	Golden flower (diploid) 2	31.232
	CNS0095603	Golden flower (diploid) 3	30.418
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.678
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.476
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.842
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.704
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.295
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.189
	CNS0095610	Silvery flower (tetraploid) 1	36.188
	CNS0095611	Silvery flower (tetraploid) 2	42.539
	CNS0095612	Silvery flower (tetraploid) 3	43.448
	CNS0095613	Golden flower (tetraploid) 1	21.392
	CNS0095614	Golden flower (tetraploid) 2	30.646
	CNS0095615	Golden flower (tetraploid) 3	20.489
CRA001975	CRR073297	Stem 1	34.205
	CRR073298	Stem 2	28.659
	CRR073299	Stem 3	36.317
	CRR073300	Leaf 1	33.526
	CRR073301	Leaf 2	31.579
	CRR073302	Leaf 3	39.730
	CRR073303	Juvenile bud 1	40.012
	CRR073304	Juvenile bud 2	26.533
	CRR073305	Juvenile bud 3	29.542
	CRR073306	Third green 1	11.029
	CRR073307	Third green 2	8.751
	CRR073308	Third green 3	9.523
	CRR073309	Second white 1	23.377
	CRR073310	Second white 2	24.869
	CRR073311	Second white 3	20.290
	CRR073312	Silver flowering 1	16.274
	CRR073313	Silver flowering 2	12.807
	CRR073314	Silver flowering 3	16.907
	CRR073315	Gold flowering 1	77.264
	CRR073316	Gold flowering 2	106.198
	CRR073317	Gold flowering 3	60.453
	CRR073318	Tawny withering 1	17.422
	CRR073319	Tawny withering 2	14.067
	CRR073320	Tawny withering 3	15.911