Detail information of GWHGAAZE006936


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003631193.10PREDICTED: protein CHROMATIN REMODELING 4 [Vitis vinifera]
Swissprottr|F4KBP5|CHR4_ARATH0Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|A0A061DXR9|A0A061DXR9_THECC0Chromatin remodeling complex subunit {ECO:0000313|EMBL:EOX96881.1}
TAIR10AT5G44800.10chromatin remodeling 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3446066234475706-
GWHAAZE00000002mRNA3446066234475706-
GWHAAZE00000002exon3447549134475706-
GWHAAZE00000002exon3447472234474823-
GWHAAZE00000002exon3447391234474592-
GWHAAZE00000002exon3447304734473154-
GWHAAZE00000002exon3446958734472247-
GWHAAZE00000002exon3446815334468310-
GWHAAZE00000002exon3446717534467289-
GWHAAZE00000002exon3446667434466756-
GWHAAZE00000002exon3446341134464017-
GWHAAZE00000002exon3446066234462464-
GWHAAZE00000002CDS3447549134475706-
GWHAAZE00000002CDS3447472234474823-
GWHAAZE00000002CDS3447391234474592-
GWHAAZE00000002CDS3447304734473154-
GWHAAZE00000002CDS3446958734472247-
GWHAAZE00000002CDS3446815334468310-
GWHAAZE00000002CDS3446717534467289-
GWHAAZE00000002CDS3446667434466756-
GWHAAZE00000002CDS3446341134464017-
GWHAAZE00000002CDS3446066234462464-
Transcript Sequence

Network for GWHGAAZE006936

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD771191.40E-08
PF00385.25Chromo5315821.90E-06
PF00385.25Chromo5986495.20E-09
PF00176.24SNF2_N7039813.10E-61
PF00271.32Helicase_C100511187.50E-17
PF06465.14DUF1087128813353.90E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.014
SRR3591706second leaf10.266
SRR3591707mature leaf10.184
SRR3591708Shoot apex14.652
SRR3591709Stem16.232
SRR3591710White floral bud13.234
SRR3591711White flower16.775
SRR3591712Green floral bud14.343
SRR3591713Yellow flower12.543
SRP173429 SRR8316895Juvenile bud stage 8.680
SRR8316896Juvenile bud stage 11.339
SRR8316897Juvenile bud stage 5.825
SRR8316894Third green stage 5.566
SRR8316900Third green stage 13.991
SRR8316901Third green stage 12.764
SRR8316898Complete white stage 3.285
SRR8316899Complete white stage 11.688
SRR8316903Complete white stage 10.680
SRR8316902Silver flowering stage6.438
SRR8316904Silver flowering stage11.182
SRR8316905Silver flowering stage5.142
SRR8316906Gold flowering stage 15.043
SRR8316907Gold flowering stage 13.851
SRR8316908Gold flowering stage 14.596
SRP132670SRR6706286Control14.493
SRR6706287Light intensity 50%14.944
SRR6706288Light intensity 20%14.746
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.098
CNS0095593Slightly white alabastrum(diploid) 28.809
CNS0095594Slightly white alabastrum(diploid) 38.939
CNS0095595Whole white alabastrum(diploid) 28.643
CNS0095596Whole white alabastrum(diploid) 37.231
CNS0095597Whole white alabastrum(diploid) 48.985
CNS0095598Silvery flower (diploied) 110.419
CNS0095599Silvery flower (diploied) 28.880
CNS0095600Silvery flower (diploied) 321.726
CNS0095601Golden flower (diploid) 19.692
CNS0095602Golden flower (diploid) 221.448
CNS0095603Golden flower (diploid) 320.971
CNS0095604Slightly white alabastrum(tetraploid) 112.074
CNS0095605Slightly white alabastrum(tetraploid) 210.671
CNS0095606Slightly white alabastrum(tetraploid) 320.694
CNS0095607Whole white alabastrum(tetraploid) 19.527
CNS0095608Whole white alabastrum(tetraploid) 28.560
CNS0095609Whole white alabastrum(tetraploid) 315.404
CNS0095610Silvery flower (tetraploid) 123.067
CNS0095611Silvery flower (tetraploid) 220.922
CNS0095612Silvery flower (tetraploid) 320.667
CNS0095613Golden flower (tetraploid) 111.581
CNS0095614Golden flower (tetraploid) 218.291
CNS0095615Golden flower (tetraploid) 324.633
CRA001975CRR073297Stem 116.804
CRR073298Stem 214.480
CRR073299Stem 38.961
CRR073300Leaf 118.138
CRR073301Leaf 215.751
CRR073302Leaf 39.390
CRR073303Juvenile bud 113.401
CRR073304Juvenile bud 26.197
CRR073305Juvenile bud 316.676
CRR073306Third green 17.657
CRR073307Third green 24.786
CRR073308Third green 37.026
CRR073309Second white 14.926
CRR073310Second white 29.237
CRR073311Second white 311.660
CRR073312Silver flowering 111.533
CRR073313Silver flowering 212.481
CRR073314Silver flowering 311.302
CRR073315Gold flowering 14.546
CRR073316Gold flowering 28.819
CRR073317Gold flowering 32.829
CRR073318Tawny withering 112.044
CRR073319Tawny withering 210.949
CRR073320Tawny withering 39.950