Detail information of GWHGAAZE006940


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02905.10unnamed protein product [Coffea canephora]
Swissprottr|Q6KAE5|XB32_ORYSJ0Probable E3 ubiquitin-protein ligase XBOS32
trEMBLtr|A0A068U2X4|A0A068U2X4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP02905.1}
TAIR10AT5G57740.17E-169XB3 ortholog 2 in Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3457335534579213-
GWHAAZE00000002mRNA3457335534579213-
GWHAAZE00000002exon3457866634579213-
GWHAAZE00000002exon3457803934578098-
GWHAAZE00000002exon3457786934577940-
GWHAAZE00000002exon3457757834577753-
GWHAAZE00000002exon3457731834577478-
GWHAAZE00000002exon3457637034576428-
GWHAAZE00000002exon3457623834576284-
GWHAAZE00000002exon3457570134575841-
GWHAAZE00000002exon3457483534574929-
GWHAAZE00000002exon3457335534573869-
GWHAAZE00000002five_prime_UTR3457886134579213-
GWHAAZE00000002CDS3457866634578860-
GWHAAZE00000002CDS3457803934578098-
GWHAAZE00000002CDS3457786934577940-
GWHAAZE00000002CDS3457757834577753-
GWHAAZE00000002CDS3457731834577478-
GWHAAZE00000002CDS3457637034576428-
GWHAAZE00000002CDS3457623834576284-
GWHAAZE00000002CDS3457570134575841-
GWHAAZE00000002CDS3457483534574929-
GWHAAZE00000002CDS3457335534573869-
Transcript Sequence

Network for GWHGAAZE006940

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.8Ank_220811.30E-07
PF12796.8Ank_2882092.50E-16
PF12796.8Ank_22232761.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.369
SRR3591706second leaf6.397
SRR3591707mature leaf4.638
SRR3591708Shoot apex8.701
SRR3591709Stem15.956
SRR3591710White floral bud30.009
SRR3591711White flower17.282
SRR3591712Green floral bud19.680
SRR3591713Yellow flower16.170
SRP173429 SRR8316895Juvenile bud stage 7.525
SRR8316896Juvenile bud stage 9.647
SRR8316897Juvenile bud stage 3.431
SRR8316894Third green stage 4.303
SRR8316900Third green stage 18.136
SRR8316901Third green stage 13.602
SRR8316898Complete white stage 8.493
SRR8316899Complete white stage 21.318
SRR8316903Complete white stage 14.808
SRR8316902Silver flowering stage10.403
SRR8316904Silver flowering stage12.268
SRR8316905Silver flowering stage6.047
SRR8316906Gold flowering stage 24.219
SRR8316907Gold flowering stage 25.981
SRR8316908Gold flowering stage 17.480
SRP132670SRR6706286Control16.690
SRR6706287Light intensity 50%15.802
SRR6706288Light intensity 20%16.530
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.239
CNS0095593Slightly white alabastrum(diploid) 29.446
CNS0095594Slightly white alabastrum(diploid) 310.265
CNS0095595Whole white alabastrum(diploid) 210.899
CNS0095596Whole white alabastrum(diploid) 312.285
CNS0095597Whole white alabastrum(diploid) 410.635
CNS0095598Silvery flower (diploied) 110.395
CNS0095599Silvery flower (diploied) 28.859
CNS0095600Silvery flower (diploied) 319.251
CNS0095601Golden flower (diploid) 111.319
CNS0095602Golden flower (diploid) 221.389
CNS0095603Golden flower (diploid) 318.649
CNS0095604Slightly white alabastrum(tetraploid) 116.095
CNS0095605Slightly white alabastrum(tetraploid) 214.250
CNS0095606Slightly white alabastrum(tetraploid) 315.908
CNS0095607Whole white alabastrum(tetraploid) 116.303
CNS0095608Whole white alabastrum(tetraploid) 214.815
CNS0095609Whole white alabastrum(tetraploid) 318.083
CNS0095610Silvery flower (tetraploid) 116.539
CNS0095611Silvery flower (tetraploid) 217.187
CNS0095612Silvery flower (tetraploid) 326.780
CNS0095613Golden flower (tetraploid) 114.393
CNS0095614Golden flower (tetraploid) 217.315
CNS0095615Golden flower (tetraploid) 322.168
CRA001975CRR073297Stem 113.121
CRR073298Stem 214.028
CRR073299Stem 310.951
CRR073300Leaf 119.146
CRR073301Leaf 217.883
CRR073302Leaf 312.223
CRR073303Juvenile bud 116.429
CRR073304Juvenile bud 29.671
CRR073305Juvenile bud 314.754
CRR073306Third green 112.044
CRR073307Third green 210.708
CRR073308Third green 312.739
CRR073309Second white 19.437
CRR073310Second white 219.241
CRR073311Second white 318.072
CRR073312Silver flowering 123.113
CRR073313Silver flowering 220.238
CRR073314Silver flowering 322.672
CRR073315Gold flowering 15.183
CRR073316Gold flowering 24.857
CRR073317Gold flowering 32.684
CRR073318Tawny withering 116.624
CRR073319Tawny withering 213.309
CRR073320Tawny withering 320.398