Gene detail

Detail information of GWHGAAZE006942

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGS47790.1	1.4604E-161	argonaute 3 [Salvia miltiorrhiza]
Swissprot	tr\|Q9SHF3\|AGO2_ARATH	4E-130	Protein argonaute 2
trEMBL	tr\|S5TJ04\|S5TJ04_SALMI	5E-162	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT1G31280.1	1E-116	Argonaute family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	34626058	34631406	+
GWHAAZE00000002	mRNA	34626058	34631406	+
GWHAAZE00000002	exon	34626058	34626370	+
GWHAAZE00000002	exon	34628883	34628965	+
GWHAAZE00000002	exon	34629106	34629845	+
GWHAAZE00000002	exon	34630017	34631406	+
GWHAAZE00000002	CDS	34626058	34626370	+
GWHAAZE00000002	CDS	34628883	34628965	+
GWHAAZE00000002	CDS	34629106	34629845	+
GWHAAZE00000002	CDS	34630017	34631406	+

Transcript Sequence
>GWHTAAZE006950 ATGGAAGGCCGTGGTAACTATGGCCGTCACAGCGCTGGTGACGGTGTTGAAGTAAACAGAGGCGGTGGCCCGAATGTCCCTGTGCCGGTGGTGCTGATGGACAATCCTCCGGCGAAATCGCATCTCCATGTGCCGCCAAATCCTTCGCAAACAGATCTGACGTTTCTATCGTGTAATACGCCAGATGCCAATCAAGATGGATCTACGGCGGGGCAGAAGAGGCCGGCACCTGATTCGTGTGAACCAAGGATGCCTAAGAGTCAGAAGAGCTCGTTCACGATTTCATCTACTCCATATCAGAATTCTGATCTTGATTCAGACATCAAGTCCTTGAATCCCTCTGATGGAATTGCCACACACAGCAATACCATTGAACTTCTTGCGAATTTTTTCAAGGAGGGCGAATCGATCTTCGGTGGTATTGGAGAAGTTAACGGGGATGGCCAAATCTTTAAGGTTGATACTCCAGATTTGGACGGGACTGAGGAGTCATACGAGTTTCATATAAAAAAGAAAGCCATGCTTAATCATTCGGAGATTGATGATTTGCTAGACCGAGGGAATCTGTTAAATATCCATGCGCGAAGCTTTCAGCAAAGTTTGAAATGTACTGAGCAGGGACTTGCTCTGTGCATGGACCACACAGTGTTACCGCTAAAGGAGCCTCTGTCAGTCATTGACTTTCTTAAGCAGAAAGTTGAGGGATTCAGTGCCTCCATTGAAAAAGGAAATTTCAAAGAACTTGACGTACTAGTTAGGCAACAAGTAGAGCTGAAGTTGAAAGACCTTAAAGTTATGGTTACTCACCGCAAGACTAGCGAACGCTTTACCATAAAAGGGCTGACGGATAAAATCACGAGCAATATCACGGTAGATAGGTGGGATAAGTCAACGGGTCAGTCAACGAAGATTGGACTTGCCGATTATTTTAAAGACAGATACCGACACATAATTCAGTATCTGCATCTTCCTTGTCTGGATCTGGGAAACAGAAACTTTGTGCCGATGGAGCTATGCGAATTAGCTGAGGTGCATATGAATCGCAAGGCAAAGTCAAAGCTAGACGAGTATTCAACAGCTAAGCCATCTGCTAGAAAGGAGAAAATCTATGAATTGGTGCAGTCTGGGAGTCGTGGGAGGGCTGCTCTTGAAAAATTGGGCCTAACCGTTGAGGCTAACATGATGAAGATTGACGGTCATATAATTGACTTGCCAGCTTTGAAGGTTGGTGGTGATCAGAAAGTTGGGGAAGTTCAGACTAAGGCAGGTGGGCCAAGACTTAAAAAAGGCATGGACGTTGTGGACGGTGTGCCAGTTAAGAACTGGGCGTTAGTCGTTTTCACAAGTTCAGCTCTTGACGTGCTGATGAATGAAGATAATGAAAACAAATACGTAACCGGACTGCAGAGTGGATTCAACGAGTTAGGGATGAACTTGAAGAAGCCTTCCCTCAAACAGACATTTGATGTCCAAGAGCTTTCTGATGTATCTCGAGTCGAGGATATGCTCAAAAAAGTTGTTATAGCGGCTGGCCCTGAATTGGATTTTGTTATTTGCGTTATGCCAGAGAAACACGAAGGTTATAGGTACATTAAGTGGGTATCCGAGATGAAAATCGGAGTTATTACCCAATGTTGTCTAGCTGCCGGCGCTGAAAAGTCTGAAAAGTGCCGTTTCTTCAGAAATCTGGCCCTGAAAATAAACGCCAAACTTGGAGGGACCAATGTCGAATTGGATAACCACCTTCTAGGTTTTGAGGAAGAAGATTCTATCATGTTGATTGGGGCCAGTGTTAGTCATTCTGAGGCACAAAATAAATGTAGTTCGTCAATAGCAGCGGTGGCTGCTAACATAGACCCTTCCATGGCTCGCTATGCAGCTCGGGTTCGACCCCAAACCCGCCGAACAGAGAAGATTCTGGAGTTTGGAGAGATGGTCAATGAGTTGGTCAAGGCTTATGAAAGTAAGAACAAGGCCAAGCCAAAGAAAATAATAATTTTTCGACAAGGTGTTTCAGAAAGTCAAATCGACATGGTTCTAAAAGAAGAATTACCCAACATGAAGTCGGCTATCTCTGATGGAGGAAAGTACAGTCCATCCATCACCCTCATTGTGGTTGTGAAGCGGCACAGAACCCGTCTTTTTATTGACAGCGATAAAAATGAGAATGTGCCCAAGGGGACCGTGGTGGACTCGCGGATCGTGCCACCAAGTCCAAATAAGTGGAACTTCTATTTGTGCAGCCACCGTAGTTTCTCAGGGACGGTCAAACCAACTTACTACCGTGTCTTGTACGACGAGAACAAACTGACTTCCAAGAAGATTCAGGAGTTGGTCTACAAAATTTGCTTCACCTGTGCAAGAAGTATTTACTCGGTGTCCCTGGTCCCACCGCTGTATTATGCCGGTCTTGCTGCCTCAAGAGGACAAGCATTCAGAGAAGCATTGCCAGACGAGGTCAACCAAGGGGCTCAAAGTAGGTACACACTTGAAAGCAAGTTGAAGGATGCTATGTTCTTTGTCTAA

Network for GWHGAAZE006942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02170.23	PAZ	253	351	2.80E-14
PF02171.18	Piwi	516	810	2.30E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.919
	SRR3591706	second leaf	0.922
	SRR3591707	mature leaf	0.355
	SRR3591708	Shoot apex	0.934
	SRR3591709	Stem	2.163
	SRR3591710	White floral bud	0.592
	SRR3591711	White flower	0.321
	SRR3591712	Green floral bud	13.685
	SRR3591713	Yellow flower	0.045
SRP173429	SRR8316895	Juvenile bud stage	9.097
	SRR8316896	Juvenile bud stage	44.498
	SRR8316897	Juvenile bud stage	16.920
	SRR8316894	Third green stage	17.255
	SRR8316900	Third green stage	38.917
	SRR8316901	Third green stage	39.549
	SRR8316898	Complete white stage	0.336
	SRR8316899	Complete white stage	3.634
	SRR8316903	Complete white stage	1.381
	SRR8316902	Silver flowering stage	0.258
	SRR8316904	Silver flowering stage	0.226
	SRR8316905	Silver flowering stage	0.074
	SRR8316906	Gold flowering stage	0.105
	SRR8316907	Gold flowering stage	0.153
	SRR8316908	Gold flowering stage	0.168
SRP132670	SRR6706286	Control	14.591
	SRR6706287	Light intensity 50%	13.117
	SRR6706288	Light intensity 20%	12.479
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.288
	CNS0095593	Slightly white alabastrum(diploid) 2	37.987
	CNS0095594	Slightly white alabastrum(diploid) 3	98.314
	CNS0095595	Whole white alabastrum(diploid) 2	53.684
	CNS0095596	Whole white alabastrum(diploid) 3	79.617
	CNS0095597	Whole white alabastrum(diploid) 4	76.199
	CNS0095598	Silvery flower (diploied) 1	3.254
	CNS0095599	Silvery flower (diploied) 2	6.350
	CNS0095600	Silvery flower (diploied) 3	4.855
	CNS0095601	Golden flower (diploid) 1	5.012
	CNS0095602	Golden flower (diploid) 2	5.739
	CNS0095603	Golden flower (diploid) 3	6.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	69.529
	CNS0095605	Slightly white alabastrum(tetraploid) 2	92.649
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.822
	CNS0095607	Whole white alabastrum(tetraploid) 1	97.585
	CNS0095608	Whole white alabastrum(tetraploid) 2	69.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.710
	CNS0095610	Silvery flower (tetraploid) 1	0.986
	CNS0095611	Silvery flower (tetraploid) 2	1.575
	CNS0095612	Silvery flower (tetraploid) 3	1.050
	CNS0095613	Golden flower (tetraploid) 1	0.216
	CNS0095614	Golden flower (tetraploid) 2	0.320
	CNS0095615	Golden flower (tetraploid) 3	0.128
CRA001975	CRR073297	Stem 1	19.594
	CRR073298	Stem 2	28.008
	CRR073299	Stem 3	21.638
	CRR073300	Leaf 1	20.211
	CRR073301	Leaf 2	15.999
	CRR073302	Leaf 3	14.280
	CRR073303	Juvenile bud 1	3.711
	CRR073304	Juvenile bud 2	2.209
	CRR073305	Juvenile bud 3	4.425
	CRR073306	Third green 1	2.515
	CRR073307	Third green 2	3.505
	CRR073308	Third green 3	2.415
	CRR073309	Second white 1	0.304
	CRR073310	Second white 2	0.634
	CRR073311	Second white 3	0.667
	CRR073312	Silver flowering 1	0.383
	CRR073313	Silver flowering 2	0.528
	CRR073314	Silver flowering 3	0.243
	CRR073315	Gold flowering 1	2.667
	CRR073316	Gold flowering 2	1.889
	CRR073317	Gold flowering 3	2.484
	CRR073318	Tawny withering 1	0.818
	CRR073319	Tawny withering 2	0.752
	CRR073320	Tawny withering 3	0.131