Detail information of GWHGAAZE006952


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFK36203.17.01343E-73unknown [Lotus japonicus]
Swissprottr|O82179|GCSH2_ARATH2E-72Glycine cleavage system H protein 2, mitochondrial (Precursor)
trEMBLtr|I3S7G1|I3S7G1_LOTJA3E-73Uncharacterized protein {ECO:0000313|EMBL:AFK36203.1}
TAIR10AT2G35120.12E-57Single hybrid motif superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3504913135051293-
GWHAAZE00000002mRNA3504913135051293-
GWHAAZE00000002exon3505126335051293-
GWHAAZE00000002exon3505090835051167-
GWHAAZE00000002exon3504913135049566-
GWHAAZE00000002CDS3505126335051293-
GWHAAZE00000002CDS3505090835051167-
GWHAAZE00000002CDS3504943835049566-
GWHAAZE00000002three_prime_UTR3504913135049437-
Transcript Sequence

Network for GWHGAAZE006952

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01597.20GCV_H151342.50E-49
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02437gcvH, GCSH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Glycine, serine and threonine metabolismmap00260

Gene Ontology

GO term OntologyName
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005960cellular_componentglycine cleavage complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf135.653
SRR3591706second leaf26.259
SRR3591707mature leaf9.314
SRR3591708Shoot apex94.533
SRR3591709Stem397.211
SRR3591710White floral bud32.473
SRR3591711White flower45.955
SRR3591712Green floral bud76.544
SRR3591713Yellow flower42.870
SRP173429 SRR8316895Juvenile bud stage 56.190
SRR8316896Juvenile bud stage 96.557
SRR8316897Juvenile bud stage 36.403
SRR8316894Third green stage 34.396
SRR8316900Third green stage 153.651
SRR8316901Third green stage 131.948
SRR8316898Complete white stage 32.991
SRR8316899Complete white stage 81.085
SRR8316903Complete white stage 38.797
SRR8316902Silver flowering stage33.195
SRR8316904Silver flowering stage40.151
SRR8316905Silver flowering stage20.523
SRR8316906Gold flowering stage 81.852
SRR8316907Gold flowering stage 85.415
SRR8316908Gold flowering stage 68.119
SRP132670SRR6706286Control25.048
SRR6706287Light intensity 50%26.757
SRR6706288Light intensity 20%28.375
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1165.003
CNS0095593Slightly white alabastrum(diploid) 2177.566
CNS0095594Slightly white alabastrum(diploid) 3173.325
CNS0095595Whole white alabastrum(diploid) 2164.652
CNS0095596Whole white alabastrum(diploid) 3186.854
CNS0095597Whole white alabastrum(diploid) 4143.960
CNS0095598Silvery flower (diploied) 158.422
CNS0095599Silvery flower (diploied) 272.894
CNS0095600Silvery flower (diploied) 371.884
CNS0095601Golden flower (diploid) 154.606
CNS0095602Golden flower (diploid) 259.182
CNS0095603Golden flower (diploid) 360.987
CNS0095604Slightly white alabastrum(tetraploid) 1173.873
CNS0095605Slightly white alabastrum(tetraploid) 2175.213
CNS0095606Slightly white alabastrum(tetraploid) 3154.658
CNS0095607Whole white alabastrum(tetraploid) 1136.319
CNS0095608Whole white alabastrum(tetraploid) 2132.257
CNS0095609Whole white alabastrum(tetraploid) 3156.897
CNS0095610Silvery flower (tetraploid) 1100.949
CNS0095611Silvery flower (tetraploid) 271.613
CNS0095612Silvery flower (tetraploid) 379.273
CNS0095613Golden flower (tetraploid) 197.994
CNS0095614Golden flower (tetraploid) 2102.519
CNS0095615Golden flower (tetraploid) 323.637
CRA001975CRR073297Stem 161.177
CRR073298Stem 257.261
CRR073299Stem 347.338
CRR073300Leaf 169.245
CRR073301Leaf 258.904
CRR073302Leaf 377.032
CRR073303Juvenile bud 175.727
CRR073304Juvenile bud 278.403
CRR073305Juvenile bud 343.096
CRR073306Third green 130.478
CRR073307Third green 244.161
CRR073308Third green 327.197
CRR073309Second white 163.882
CRR073310Second white 254.284
CRR073311Second white 336.810
CRR073312Silver flowering 136.063
CRR073313Silver flowering 241.357
CRR073314Silver flowering 327.944
CRR073315Gold flowering 112.852
CRR073316Gold flowering 211.180
CRR073317Gold flowering 313.410
CRR073318Tawny withering 188.304
CRR073319Tawny withering 2111.608
CRR073320Tawny withering 3152.035