Detail information of GWHGAAZE006960


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277516.10PREDICTED: lecithin-cholesterol acyltransferase-like 4 [Vitis vinifera]
Swissprottr|Q71N54|LCAT4_ARATH0Lecithin-cholesterol acyltransferase-like 4
trEMBLtr|D7T9J5|D7T9J5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI27166.3}
TAIR10AT4G19860.10alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3521140035218324-
GWHAAZE00000002mRNA3521140035218324-
GWHAAZE00000002exon3521140035211807-
GWHAAZE00000002exon3521266335212716-
GWHAAZE00000002exon3521322535213279-
GWHAAZE00000002exon3521342435213581-
GWHAAZE00000002exon3521385735214039-
GWHAAZE00000002exon3521448335214583-
GWHAAZE00000002exon3521532835215379-
GWHAAZE00000002exon3521547135215606-
GWHAAZE00000002exon3521569035215808-
GWHAAZE00000002exon3521712635217217-
GWHAAZE00000002exon3521808735218324-
GWHAAZE00000002CDS3521808735218324-
GWHAAZE00000002CDS3521712635217217-
GWHAAZE00000002CDS3521569035215808-
GWHAAZE00000002CDS3521547135215606-
GWHAAZE00000002CDS3521532835215379-
GWHAAZE00000002CDS3521448335214583-
GWHAAZE00000002CDS3521385735214039-
GWHAAZE00000002CDS3521342435213581-
GWHAAZE00000002CDS3521322535213279-
GWHAAZE00000002CDS3521266335212716-
GWHAAZE00000002CDS3521140035211807-
Transcript Sequence

Network for GWHGAAZE006960

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02450.16LCAT983961.90E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K22389LCAT3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0006629biological_processlipid metabolic process
GO:0008374molecular_functionO-acyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.498
SRR3591706second leaf17.389
SRR3591707mature leaf24.605
SRR3591708Shoot apex27.624
SRR3591709Stem91.532
SRR3591710White floral bud130.370
SRR3591711White flower176.673
SRR3591712Green floral bud38.211
SRR3591713Yellow flower234.058
SRP173429 SRR8316895Juvenile bud stage 13.524
SRR8316896Juvenile bud stage 21.915
SRR8316897Juvenile bud stage 7.231
SRR8316894Third green stage 8.645
SRR8316900Third green stage 25.478
SRR8316901Third green stage 27.943
SRR8316898Complete white stage 57.910
SRR8316899Complete white stage 53.390
SRR8316903Complete white stage 74.817
SRR8316902Silver flowering stage82.680
SRR8316904Silver flowering stage117.025
SRR8316905Silver flowering stage65.972
SRR8316906Gold flowering stage 275.002
SRR8316907Gold flowering stage 235.101
SRR8316908Gold flowering stage 247.543
SRP132670SRR6706286Control27.804
SRR6706287Light intensity 50%30.372
SRR6706288Light intensity 20%25.184
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.414
CNS0095593Slightly white alabastrum(diploid) 216.274
CNS0095594Slightly white alabastrum(diploid) 320.120
CNS0095595Whole white alabastrum(diploid) 216.311
CNS0095596Whole white alabastrum(diploid) 313.572
CNS0095597Whole white alabastrum(diploid) 420.650
CNS0095598Silvery flower (diploied) 155.499
CNS0095599Silvery flower (diploied) 255.454
CNS0095600Silvery flower (diploied) 3165.721
CNS0095601Golden flower (diploid) 171.335
CNS0095602Golden flower (diploid) 2152.822
CNS0095603Golden flower (diploid) 3146.903
CNS0095604Slightly white alabastrum(tetraploid) 126.151
CNS0095605Slightly white alabastrum(tetraploid) 220.572
CNS0095606Slightly white alabastrum(tetraploid) 339.656
CNS0095607Whole white alabastrum(tetraploid) 121.381
CNS0095608Whole white alabastrum(tetraploid) 219.842
CNS0095609Whole white alabastrum(tetraploid) 333.227
CNS0095610Silvery flower (tetraploid) 1198.264
CNS0095611Silvery flower (tetraploid) 2213.571
CNS0095612Silvery flower (tetraploid) 3237.927
CNS0095613Golden flower (tetraploid) 1235.003
CNS0095614Golden flower (tetraploid) 2198.933
CNS0095615Golden flower (tetraploid) 3455.654
CRA001975CRR073297Stem 127.513
CRR073298Stem 224.899
CRR073299Stem 330.244
CRR073300Leaf 132.469
CRR073301Leaf 225.877
CRR073302Leaf 325.937
CRR073303Juvenile bud 136.617
CRR073304Juvenile bud 232.558
CRR073305Juvenile bud 339.332
CRR073306Third green 181.661
CRR073307Third green 273.149
CRR073308Third green 366.624
CRR073309Second white 1151.974
CRR073310Second white 2144.498
CRR073311Second white 3164.263
CRR073312Silver flowering 1179.672
CRR073313Silver flowering 2160.729
CRR073314Silver flowering 3148.334
CRR073315Gold flowering 112.964
CRR073316Gold flowering 215.969
CRR073317Gold flowering 312.781
CRR073318Tawny withering 139.524
CRR073319Tawny withering 226.142
CRR073320Tawny withering 335.015