Gene detail

Detail information of GWHGAAZE006987

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010257696.1	3.1318E-94	PREDICTED: GATA transcription factor 2-like [Nelumbo nucifera]
Swissprot	tr\|O82632\|GATA9_ARATH	3E-41	GATA transcription factor 9
trEMBL	tr\|A0A061F2V5\|A0A061F2V5_THECC	7E-91	GATA transcription factor 9, putative {ECO:0000313\|EMBL:EOY11203.1}
TAIR10	AT4G32890.1	1E-29	GATA transcription factor 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35724253	35726781	-
GWHAAZE00000002	mRNA	35724253	35726781	-
GWHAAZE00000002	exon	35724253	35724897	-
GWHAAZE00000002	exon	35726581	35726781	-
GWHAAZE00000002	CDS	35726581	35726781	-
GWHAAZE00000002	CDS	35724253	35724897	-

Transcript Sequence
>GWHTAAZE006995 ATGCACTTACAAATACACCCCCTCTTCTCTTTTTCTTTCACTGTGGATGCTGCAAAGGAAAAAAGGCTCTATACTTTGCTTGAGATTATGGACTTCTGCCGGAATGTTTCACTCTCCAGTGGTCTCCCGTCGGAATATCAGCCGGAACAAGTTTTTCCTTCTTCTTGCAGCCTTGACGACCTCTTTTCCGGTCACTCACCGGAAGGAGATTTAAACTTAGAATGGCTCTCCATATTTGTAGAAGACTGCCTATCCAGCTCTGGAAATTGCCTACCCCCACCCCCAAATCTTCAAAACCCTAAAACCCCACCTAAACCCACACAGACCAAACAACAAATACCTCCTCCACTGCACAAATTCCCCATTCCAAGCAAGGCAAGAACCAAAAGGAAGAGGAATCCATTACCCAAATCCAAAAACCCATTTACAATGTGGTCCCACAATTTCAATCCACAACCCCAAATGACCACCCCTATCCCTGACCCTCCCCTGCTCCAACAAGCTTACTGGTTAGCTGACAGTGAGCTCATTTTGCCCAAAAATGGAGACAAAGATAGAGAAATCAACAATGAAGAAGAAGAAGAAGAAGAGAGAGAGAAAGTAGGGGTGGGGCAGGGGAGGAGGTGTAGCCATTGTTTGTCACAAAAAACACCGCAGTGGAGGGCAGGGCCATTGGGACCAAAGACACTGTGTAATGCATGTGGGGTGAGGTACAAGTCAGGCAGGTTGCTGCCCGAGTATAGGCCAGCTAAGAGCCCTAGTTTTGTGAGTTATAAGCACTCCAATTCTCACAAGAAAGTTTTGGAGATGAGGATGTCTCTTCTCTCCTCTTCCTCCAATTCTTAG

Network for GWHGAAZE006987

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00320.28	GATA	209	243	2.10E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.038
	SRR3591706	second leaf	59.145
	SRR3591707	mature leaf	8.657
	SRR3591708	Shoot apex	76.272
	SRR3591709	Stem	23.310
	SRR3591710	White floral bud	10.048
	SRR3591711	White flower	5.142
	SRR3591712	Green floral bud	27.688
	SRR3591713	Yellow flower	0.382
SRP173429	SRR8316895	Juvenile bud stage	14.875
	SRR8316896	Juvenile bud stage	15.286
	SRR8316897	Juvenile bud stage	5.451
	SRR8316894	Third green stage	7.717
	SRR8316900	Third green stage	17.999
	SRR8316901	Third green stage	23.187
	SRR8316898	Complete white stage	1.058
	SRR8316899	Complete white stage	20.656
	SRR8316903	Complete white stage	2.656
	SRR8316902	Silver flowering stage	0.043
	SRR8316904	Silver flowering stage	1.844
	SRR8316905	Silver flowering stage	0.003
	SRR8316906	Gold flowering stage	0.378
	SRR8316907	Gold flowering stage	0.570
	SRR8316908	Gold flowering stage	0.119
SRP132670	SRR6706286	Control	29.228
	SRR6706287	Light intensity 50%	30.790
	SRR6706288	Light intensity 20%	30.598
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.009
	CNS0095593	Slightly white alabastrum(diploid) 2	20.158
	CNS0095594	Slightly white alabastrum(diploid) 3	10.042
	CNS0095595	Whole white alabastrum(diploid) 2	15.814
	CNS0095596	Whole white alabastrum(diploid) 3	12.395
	CNS0095597	Whole white alabastrum(diploid) 4	12.136
	CNS0095598	Silvery flower (diploied) 1	16.148
	CNS0095599	Silvery flower (diploied) 2	13.322
	CNS0095600	Silvery flower (diploied) 3	2.230
	CNS0095601	Golden flower (diploid) 1	10.928
	CNS0095602	Golden flower (diploid) 2	5.620
	CNS0095603	Golden flower (diploid) 3	5.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.129
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.553
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.253
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.984
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.049
	CNS0095610	Silvery flower (tetraploid) 1	3.224
	CNS0095611	Silvery flower (tetraploid) 2	4.683
	CNS0095612	Silvery flower (tetraploid) 3	4.022
	CNS0095613	Golden flower (tetraploid) 1	0.445
	CNS0095614	Golden flower (tetraploid) 2	3.041
	CNS0095615	Golden flower (tetraploid) 3	1.374
CRA001975	CRR073297	Stem 1	58.344
	CRR073298	Stem 2	55.666
	CRR073299	Stem 3	51.665
	CRR073300	Leaf 1	42.921
	CRR073301	Leaf 2	39.314
	CRR073302	Leaf 3	27.733
	CRR073303	Juvenile bud 1	27.178
	CRR073304	Juvenile bud 2	20.940
	CRR073305	Juvenile bud 3	25.637
	CRR073306	Third green 1	1.839
	CRR073307	Third green 2	0.094
	CRR073308	Third green 3	4.257
	CRR073309	Second white 1	0.123
	CRR073310	Second white 2	0.797
	CRR073311	Second white 3	0.268
	CRR073312	Silver flowering 1	0.193
	CRR073313	Silver flowering 2	0.063
	CRR073314	Silver flowering 3	0.218
	CRR073315	Gold flowering 1	11.408
	CRR073316	Gold flowering 2	10.657
	CRR073317	Gold flowering 3	7.938
	CRR073318	Tawny withering 1	17.630
	CRR073319	Tawny withering 2	14.614
	CRR073320	Tawny withering 3	7.937