Gene detail

Detail information of GWHGAAZE006990

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP20270.1	1.3665E-145	hypothetical protein JCGZ_06856 [Jatropha curcas]
Swissprot	tr\|Q08632\|SDR1_PICAB	4E-103	Short-chain type dehydrogenase/reductase
trEMBL	tr\|A0A067JJV8\|A0A067JJV8_JATCU	5E-146	Uncharacterized protein {ECO:0000313\|EMBL:KDP20270.1}
TAIR10	AT3G03980.1	8E-97	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35749006	35750663	-
GWHAAZE00000002	mRNA	35749006	35750663	-
GWHAAZE00000002	exon	35749006	35749381	-
GWHAAZE00000002	exon	35750101	35750569	-
GWHAAZE00000002	exon	35750660	35750663	-
GWHAAZE00000002	CDS	35750660	35750663	-
GWHAAZE00000002	CDS	35750101	35750569	-
GWHAAZE00000002	CDS	35749006	35749381	-

Transcript Sequence
>GWHTAAZE006998 ATGCAACTACTAGACAGTGTTATATTTGTGCCCCAATCCAGACCATCCATTCATGGCTTCAGAAGCAATCCCCACCGTCCATCAAACCCAACCCTCCAAAACCGAGTCGCCATCGTCACCGGCGGCTCCCGAGGAATCGGGAAAGCAATTGCCCTTCACCTGGCTTCCCTCGGCGCCAAAATCATCATCAATTACATGTCCAACTCCACCGAAGCAGATCTCACCGCCGCCCAAATAAACAACTCCACCTCTGACTCCCCACGCGCCGTCGCCGTTAAAGCCGACGTCTCTGATCCTGCCCAGGTCAATTCCCTCTTCGACGCCGCCGAATCGGCCTTCAACTCGTCGATACATATCCTGGTCAATTCCGCCGGGGTTCTTGACCCCAAGTACCCGACGATTTCCAACATGACGCTAGAGGATTTTGATCGTACATTCGCTGTCAACACCAGGGGGACGTTTTTGTGCTGCAGGGAGGCGGCAAACCGGCTGAGGCGTGGTGGAGGGGGGAGGATTATCTGCTTGACGTCGTCGATGGTGGCAGCACTCCGCCCAGGATACGGGGCATACGCGGCATCGAAGGCGGCAGTAGAGGCAATGGTGAAGATAATGGCAAAAGAGTTGAAAGGGACGGGGATCACGGCAAATTGTGTGGCACCTGGGCCAATTGCAACGGAGATGTTCTTCGCTGGGAAGACAGAGGAGGTGGTGCAGAGGGTGGTAGATGAGTCGCCATTGTGCCGGCTGGGGCAAACAGAGGATGTGGCTCCGGTGGTAGGGTTCTTAGCGAGTGACGCAGGCGAGTGGGTTAATGGTCAGGTTATTCGCGTGAATGGGGGCTACGTGTGA

Network for GWHGAAZE006990

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	43	281	1.10E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00059	fabG, OAR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780
		Prodigiosin biosynthesis	map00333

Gene Ontology

GO term	Ontology	Name
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.689
	SRR3591706	second leaf	15.155
	SRR3591707	mature leaf	17.995
	SRR3591708	Shoot apex	34.240
	SRR3591709	Stem	56.327
	SRR3591710	White floral bud	36.660
	SRR3591711	White flower	34.244
	SRR3591712	Green floral bud	33.186
	SRR3591713	Yellow flower	29.982
SRP173429	SRR8316895	Juvenile bud stage	26.766
	SRR8316896	Juvenile bud stage	39.549
	SRR8316897	Juvenile bud stage	10.117
	SRR8316894	Third green stage	14.824
	SRR8316900	Third green stage	29.921
	SRR8316901	Third green stage	27.462
	SRR8316898	Complete white stage	13.008
	SRR8316899	Complete white stage	44.636
	SRR8316903	Complete white stage	20.129
	SRR8316902	Silver flowering stage	12.922
	SRR8316904	Silver flowering stage	14.350
	SRR8316905	Silver flowering stage	8.867
	SRR8316906	Gold flowering stage	20.647
	SRR8316907	Gold flowering stage	25.180
	SRR8316908	Gold flowering stage	22.376
SRP132670	SRR6706286	Control	38.912
	SRR6706287	Light intensity 50%	33.130
	SRR6706288	Light intensity 20%	33.322
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.944
	CNS0095593	Slightly white alabastrum(diploid) 2	41.290
	CNS0095594	Slightly white alabastrum(diploid) 3	36.369
	CNS0095595	Whole white alabastrum(diploid) 2	28.202
	CNS0095596	Whole white alabastrum(diploid) 3	26.847
	CNS0095597	Whole white alabastrum(diploid) 4	23.142
	CNS0095598	Silvery flower (diploied) 1	38.595
	CNS0095599	Silvery flower (diploied) 2	35.239
	CNS0095600	Silvery flower (diploied) 3	38.774
	CNS0095601	Golden flower (diploid) 1	38.708
	CNS0095602	Golden flower (diploid) 2	45.163
	CNS0095603	Golden flower (diploid) 3	43.192
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.958
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.363
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.803
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.369
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.893
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.651
	CNS0095610	Silvery flower (tetraploid) 1	39.493
	CNS0095611	Silvery flower (tetraploid) 2	52.670
	CNS0095612	Silvery flower (tetraploid) 3	26.840
	CNS0095613	Golden flower (tetraploid) 1	29.532
	CNS0095614	Golden flower (tetraploid) 2	40.602
	CNS0095615	Golden flower (tetraploid) 3	29.875
CRA001975	CRR073297	Stem 1	40.202
	CRR073298	Stem 2	52.200
	CRR073299	Stem 3	81.281
	CRR073300	Leaf 1	26.954
	CRR073301	Leaf 2	29.680
	CRR073302	Leaf 3	27.420
	CRR073303	Juvenile bud 1	33.734
	CRR073304	Juvenile bud 2	24.917
	CRR073305	Juvenile bud 3	49.871
	CRR073306	Third green 1	10.144
	CRR073307	Third green 2	15.213
	CRR073308	Third green 3	12.278
	CRR073309	Second white 1	14.917
	CRR073310	Second white 2	6.607
	CRR073311	Second white 3	6.096
	CRR073312	Silver flowering 1	6.219
	CRR073313	Silver flowering 2	12.275
	CRR073314	Silver flowering 3	10.447
	CRR073315	Gold flowering 1	16.037
	CRR073316	Gold flowering 2	20.646
	CRR073317	Gold flowering 3	26.075
	CRR073318	Tawny withering 1	34.455
	CRR073319	Tawny withering 2	25.404
	CRR073320	Tawny withering 3	35.577