Gene detail

Detail information of GWHGAAZE006994

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011085112.1	9.4424E-179	PREDICTED: ADP-glucose phosphorylase [Sesamum indicum]
Swissprot	tr\|Q9FK51\|AGLUP_ARATH	2E-168	ADP-glucose phosphorylase
trEMBL	tr\|M5W2M7\|M5W2M7_PRUPE	3E-177	Galactose-1-phosphate uridylyltransferase {ECO:0000256\|RuleBase:RU000506}
TAIR10	AT5G18200.1	5E-123	UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35781987	35784268	-
GWHAAZE00000002	mRNA	35781987	35784268	-
GWHAAZE00000002	exon	35781987	35782250	-
GWHAAZE00000002	exon	35783125	35783415	-
GWHAAZE00000002	exon	35783786	35784268	-
GWHAAZE00000002	CDS	35783786	35784268	-
GWHAAZE00000002	CDS	35783125	35783415	-
GWHAAZE00000002	CDS	35781987	35782250	-

Transcript Sequence
>GWHTAAZE007002 ATGGCATCACCAAATCGGATCCCCGAACTTCGTAAAGACCCGGTAAACAACAGGTGGGTCATCTTCTCTCCAGCACGAGCTCGCCGGCCATCCGATTTCAAGTCCAAACAAAACCCTAACCCTAATTCCAACCCCCATTCCGAATGCCCCTTCTGTATAGGCCATGAAAAAGAATGCGCCCCCGAAATCTTCCGCTCACCGGAAAATTCCACCTCCGATTGGAAGATCAGAGTCATACAAAACCTTTACCCAGCTCTAAGTAGAGATATTGAGCCAGCATCTGTTCTATTAAAGTCGAATTCCGATTCCGATTCTGGTCGGGCCGGGTTGAATGGTTTTGGGTTTCACGATGTGGTGATTGAGTCGCCGGTTCACTCGGTTCACTTGCCGGATTTGTTGCCGGTCGAGGTTGGTGATGTTTTGCTTGCTTATAAGAAGAGGATTGAGCAGCTGAGTAGTTGTGATTCCATCAAATACGTTCAGGTGTTCAAAAACCATGGCGCCTCAGCTGGGGCTTCAATGAGCCATTCTCACAGTCAGATTATAGCCCTTCCTGTCATTCCTCCCACAGTTTCTGCCCGTCTCAACAGTATGAAGGAGCATTTTGATCAAACAGGAAAATGTAGTCTTTGTGAATCTCAATTCGAGGACCTTGTAGTGGATGAATCGACTCATTTTGTTTCAATAGCTCCATTTGCCTCTACTTCCCCGTTTGAGATTTGGATTGTTCCTCGGGCTCACTCTTCACATTTCCATGAACTTGATAGCGATAAGGCAGTCGATCTTGGGGGAATACTGAAGCTAACCCTTCGAAAGATGTCATTGCAGTTGAACAACCCGCCGTATAATTTCATGATTCATAGTTGTCCATTTGAGGTCACTTGTTCTTCTCAATTGCCTTATATTCACTGGTATTTGCAAATAGTTCCTCAGTTAACAGTGGTAGGAGGCTTTGAGATGGGAAGTGGGTGTTATATCAATCCTGTTTTTCCAGAGGATGCTGCAAAGATCTTAAGGGAAGTTGGTGTTTCTAATTAG

Network for GWHGAAZE006994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01087.23	GalP_UDP_transf	8	188	1.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00965	galT, GALT	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Amino sugar and nucleotide sugar metabolism	map00520
		Prolactin signaling pathway	map04917

Gene Ontology

GO term	Ontology	Name
GO:0033499	biological_process	galactose catabolic process via UDP-galactose
GO:0006012	biological_process	galactose metabolic process
GO:0008108	molecular_function	UDP-glucose:hexose-1-phosphate uridylyltransferase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.798
	SRR3591706	second leaf	15.422
	SRR3591707	mature leaf	14.649
	SRR3591708	Shoot apex	20.246
	SRR3591709	Stem	18.613
	SRR3591710	White floral bud	21.922
	SRR3591711	White flower	29.048
	SRR3591712	Green floral bud	21.689
	SRR3591713	Yellow flower	24.984
SRP173429	SRR8316895	Juvenile bud stage	12.223
	SRR8316896	Juvenile bud stage	18.069
	SRR8316897	Juvenile bud stage	7.896
	SRR8316894	Third green stage	9.839
	SRR8316900	Third green stage	25.872
	SRR8316901	Third green stage	22.972
	SRR8316898	Complete white stage	14.385
	SRR8316899	Complete white stage	29.352
	SRR8316903	Complete white stage	21.597
	SRR8316902	Silver flowering stage	14.247
	SRR8316904	Silver flowering stage	20.338
	SRR8316905	Silver flowering stage	7.874
	SRR8316906	Gold flowering stage	26.179
	SRR8316907	Gold flowering stage	26.933
	SRR8316908	Gold flowering stage	25.951
SRP132670	SRR6706286	Control	19.756
	SRR6706287	Light intensity 50%	18.544
	SRR6706288	Light intensity 20%	18.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.910
	CNS0095593	Slightly white alabastrum(diploid) 2	17.470
	CNS0095594	Slightly white alabastrum(diploid) 3	17.194
	CNS0095595	Whole white alabastrum(diploid) 2	10.726
	CNS0095596	Whole white alabastrum(diploid) 3	18.027
	CNS0095597	Whole white alabastrum(diploid) 4	10.387
	CNS0095598	Silvery flower (diploied) 1	15.554
	CNS0095599	Silvery flower (diploied) 2	11.784
	CNS0095600	Silvery flower (diploied) 3	26.103
	CNS0095601	Golden flower (diploid) 1	11.365
	CNS0095602	Golden flower (diploid) 2	25.291
	CNS0095603	Golden flower (diploid) 3	22.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.686
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.183
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.132
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.221
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.168
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.122
	CNS0095610	Silvery flower (tetraploid) 1	24.262
	CNS0095611	Silvery flower (tetraploid) 2	26.549
	CNS0095612	Silvery flower (tetraploid) 3	26.146
	CNS0095613	Golden flower (tetraploid) 1	15.288
	CNS0095614	Golden flower (tetraploid) 2	22.925
	CNS0095615	Golden flower (tetraploid) 3	19.855
CRA001975	CRR073297	Stem 1	20.108
	CRR073298	Stem 2	18.509
	CRR073299	Stem 3	23.112
	CRR073300	Leaf 1	19.360
	CRR073301	Leaf 2	17.351
	CRR073302	Leaf 3	22.123
	CRR073303	Juvenile bud 1	21.491
	CRR073304	Juvenile bud 2	25.106
	CRR073305	Juvenile bud 3	19.875
	CRR073306	Third green 1	21.720
	CRR073307	Third green 2	18.161
	CRR073308	Third green 3	19.301
	CRR073309	Second white 1	25.746
	CRR073310	Second white 2	19.404
	CRR073311	Second white 3	18.536
	CRR073312	Silver flowering 1	16.408
	CRR073313	Silver flowering 2	20.527
	CRR073314	Silver flowering 3	12.348
	CRR073315	Gold flowering 1	6.467
	CRR073316	Gold flowering 2	9.482
	CRR073317	Gold flowering 3	7.585
	CRR073318	Tawny withering 1	12.672
	CRR073319	Tawny withering 2	12.261
	CRR073320	Tawny withering 3	6.787