Detail information of GWHGAAZE006997


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14320.10unnamed protein product [Coffea canephora]
Swissprottr|Q43314|DHE1_ARATH0Glutamate dehydrogenase 1
trEMBLtr|A0A068V0L2|A0A068V0L2_COFCA0Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}
TAIR10AT5G18170.10glutamate dehydrogenase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3583479435841177-
GWHAAZE00000002mRNA3583479435841177-
GWHAAZE00000002exon3584088335841177-
GWHAAZE00000002exon3584055435840643-
GWHAAZE00000002exon3583799135838124-
GWHAAZE00000002exon3583754435837657-
GWHAAZE00000002exon3583706935837290-
GWHAAZE00000002exon3583668435836758-
GWHAAZE00000002exon3583648135836597-
GWHAAZE00000002exon3583611335836363-
GWHAAZE00000002exon3583576535835840-
GWHAAZE00000002exon3583559135835677-
GWHAAZE00000002exon3583479435834979-
GWHAAZE00000002five_prime_UTR3584088335841177-
GWHAAZE00000002five_prime_UTR3584055435840643-
GWHAAZE00000002five_prime_UTR3583809935838124-
GWHAAZE00000002CDS3583799135838098-
GWHAAZE00000002CDS3583754435837657-
GWHAAZE00000002CDS3583706935837290-
GWHAAZE00000002CDS3583668435836758-
GWHAAZE00000002CDS3583648135836597-
GWHAAZE00000002CDS3583611335836363-
GWHAAZE00000002CDS3583576535835840-
GWHAAZE00000002CDS3583559135835677-
GWHAAZE00000002CDS3583479435834979-
Transcript Sequence

Network for GWHGAAZE006997

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02812.19ELFV_dehydrog_N331592.40E-49
PF00208.22ELFV_dehydrog1764082.80E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00261GLUD1_2, gdhA Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
D-Glutamine and D-glutamate metabolismmap00471
Necroptosismap04217
Proximal tubule bicarbonate reclamationmap04964

Gene Ontology

GO term OntologyName
GO:0006520biological_processcellular amino acid metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf71.498
SRR3591706second leaf55.444
SRR3591707mature leaf57.842
SRR3591708Shoot apex34.690
SRR3591709Stem66.423
SRR3591710White floral bud74.538
SRR3591711White flower110.243
SRR3591712Green floral bud80.486
SRR3591713Yellow flower45.817
SRP173429 SRR8316895Juvenile bud stage 19.977
SRR8316896Juvenile bud stage 34.671
SRR8316897Juvenile bud stage 6.728
SRR8316894Third green stage 16.049
SRR8316900Third green stage 59.111
SRR8316901Third green stage 84.509
SRR8316898Complete white stage 36.083
SRR8316899Complete white stage 110.997
SRR8316903Complete white stage 56.120
SRR8316902Silver flowering stage30.506
SRR8316904Silver flowering stage34.062
SRR8316905Silver flowering stage15.138
SRR8316906Gold flowering stage 48.574
SRR8316907Gold flowering stage 50.919
SRR8316908Gold flowering stage 36.194
SRP132670SRR6706286Control66.211
SRR6706287Light intensity 50%66.259
SRR6706288Light intensity 20%60.772
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.158
CNS0095593Slightly white alabastrum(diploid) 277.536
CNS0095594Slightly white alabastrum(diploid) 346.279
CNS0095595Whole white alabastrum(diploid) 246.816
CNS0095596Whole white alabastrum(diploid) 335.398
CNS0095597Whole white alabastrum(diploid) 442.280
CNS0095598Silvery flower (diploied) 121.490
CNS0095599Silvery flower (diploied) 221.887
CNS0095600Silvery flower (diploied) 339.273
CNS0095601Golden flower (diploid) 118.965
CNS0095602Golden flower (diploid) 229.188
CNS0095603Golden flower (diploid) 325.797
CNS0095604Slightly white alabastrum(tetraploid) 157.689
CNS0095605Slightly white alabastrum(tetraploid) 250.488
CNS0095606Slightly white alabastrum(tetraploid) 3123.831
CNS0095607Whole white alabastrum(tetraploid) 144.928
CNS0095608Whole white alabastrum(tetraploid) 222.713
CNS0095609Whole white alabastrum(tetraploid) 330.982
CNS0095610Silvery flower (tetraploid) 145.461
CNS0095611Silvery flower (tetraploid) 219.934
CNS0095612Silvery flower (tetraploid) 321.407
CNS0095613Golden flower (tetraploid) 112.212
CNS0095614Golden flower (tetraploid) 231.065
CNS0095615Golden flower (tetraploid) 3155.768
CRA001975CRR073297Stem 122.763
CRR073298Stem 226.737
CRR073299Stem 333.561
CRR073300Leaf 178.069
CRR073301Leaf 264.808
CRR073302Leaf 363.246
CRR073303Juvenile bud 162.576
CRR073304Juvenile bud 248.368
CRR073305Juvenile bud 3105.806
CRR073306Third green 121.614
CRR073307Third green 235.271
CRR073308Third green 326.361
CRR073309Second white 127.763
CRR073310Second white 215.678
CRR073311Second white 314.681
CRR073312Silver flowering 146.487
CRR073313Silver flowering 244.226
CRR073314Silver flowering 341.868
CRR073315Gold flowering 159.154
CRR073316Gold flowering 248.511
CRR073317Gold flowering 359.298
CRR073318Tawny withering 1193.602
CRR073319Tawny withering 2244.997
CRR073320Tawny withering 3216.596