Detail information of GWHGAAZE007002


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009620036.13.6964E-138PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis]
Swissprottr|O65731|RS5_CICAR2E-12640S ribosomal protein S5 (Fragment)
trEMBLtr|K4D831|K4D831_SOLLC9E-138Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc11g042610.1.1}
TAIR10AT2G37270.26E-99ribosomal protein 5B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3595388735956457-
GWHAAZE00000002mRNA3595388735956457-
GWHAAZE00000002exon3595388735953941-
GWHAAZE00000002exon3595408835954291-
GWHAAZE00000002exon3595512935955400-
GWHAAZE00000002exon3595637135956457-
GWHAAZE00000002CDS3595637135956457-
GWHAAZE00000002CDS3595512935955400-
GWHAAZE00000002CDS3595408835954291-
GWHAAZE00000002CDS3595388735953941-
Transcript Sequence

Network for GWHGAAZE007002

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00177.22Ribosomal_S7602052.60E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02989RP-S5e, RPS5 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf215.211
SRR3591706second leaf89.272
SRR3591707mature leaf71.669
SRR3591708Shoot apex273.239
SRR3591709Stem162.350
SRR3591710White floral bud102.548
SRR3591711White flower132.184
SRR3591712Green floral bud198.738
SRR3591713Yellow flower88.096
SRP173429 SRR8316895Juvenile bud stage 92.336
SRR8316896Juvenile bud stage 135.745
SRR8316897Juvenile bud stage 66.490
SRR8316894Third green stage 49.244
SRR8316900Third green stage 143.979
SRR8316901Third green stage 142.913
SRR8316898Complete white stage 36.782
SRR8316899Complete white stage 146.656
SRR8316903Complete white stage 49.901
SRR8316902Silver flowering stage34.564
SRR8316904Silver flowering stage43.664
SRR8316905Silver flowering stage21.511
SRR8316906Gold flowering stage 66.513
SRR8316907Gold flowering stage 62.146
SRR8316908Gold flowering stage 75.220
SRP132670SRR6706286Control178.174
SRR6706287Light intensity 50%179.004
SRR6706288Light intensity 20%203.378
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1149.375
CNS0095593Slightly white alabastrum(diploid) 2159.743
CNS0095594Slightly white alabastrum(diploid) 3144.992
CNS0095595Whole white alabastrum(diploid) 2109.631
CNS0095596Whole white alabastrum(diploid) 3132.020
CNS0095597Whole white alabastrum(diploid) 494.756
CNS0095598Silvery flower (diploied) 1100.610
CNS0095599Silvery flower (diploied) 287.973
CNS0095600Silvery flower (diploied) 375.467
CNS0095601Golden flower (diploid) 193.918
CNS0095602Golden flower (diploid) 279.806
CNS0095603Golden flower (diploid) 383.505
CNS0095604Slightly white alabastrum(tetraploid) 1132.427
CNS0095605Slightly white alabastrum(tetraploid) 2126.680
CNS0095606Slightly white alabastrum(tetraploid) 3170.514
CNS0095607Whole white alabastrum(tetraploid) 178.435
CNS0095608Whole white alabastrum(tetraploid) 273.268
CNS0095609Whole white alabastrum(tetraploid) 3128.058
CNS0095610Silvery flower (tetraploid) 168.875
CNS0095611Silvery flower (tetraploid) 262.817
CNS0095612Silvery flower (tetraploid) 348.758
CNS0095613Golden flower (tetraploid) 148.064
CNS0095614Golden flower (tetraploid) 258.022
CNS0095615Golden flower (tetraploid) 345.293
CRA001975CRR073297Stem 1203.236
CRR073298Stem 2197.330
CRR073299Stem 3244.420
CRR073300Leaf 1204.910
CRR073301Leaf 2215.037
CRR073302Leaf 3286.337
CRR073303Juvenile bud 1226.066
CRR073304Juvenile bud 2151.498
CRR073305Juvenile bud 3167.657
CRR073306Third green 147.516
CRR073307Third green 259.037
CRR073308Third green 347.549
CRR073309Second white 151.690
CRR073310Second white 247.820
CRR073311Second white 336.293
CRR073312Silver flowering 149.357
CRR073313Silver flowering 273.882
CRR073314Silver flowering 345.601
CRR073315Gold flowering 164.326
CRR073316Gold flowering 271.856
CRR073317Gold flowering 370.147
CRR073318Tawny withering 1235.871
CRR073319Tawny withering 2184.774
CRR073320Tawny withering 3219.281