Gene detail

Detail information of GWHGAAZE007003

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004234750.1	0	PREDICTED: homogentisate solanesyltransferase, chloroplastic [Solanum lycopersicum]
Swissprot	tr\|Q1ACB3\|HSTC_ARATH	2E-167	Homogentisate solanesyltransferase, chloroplastic (Precursor)
trEMBL	tr\|M1AGG9\|M1AGG9_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400022276}
TAIR10	AT3G11945.1	3E-135	homogentisate prenyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35966799	35973274	+
GWHAAZE00000002	mRNA	35966799	35973274	+
GWHAAZE00000002	exon	35966799	35967011	+
GWHAAZE00000002	exon	35968793	35968914	+
GWHAAZE00000002	exon	35969017	35969163	+
GWHAAZE00000002	exon	35969828	35970053	+
GWHAAZE00000002	exon	35970999	35971072	+
GWHAAZE00000002	exon	35971216	35971308	+
GWHAAZE00000002	exon	35971507	35971624	+
GWHAAZE00000002	exon	35971715	35971858	+
GWHAAZE00000002	exon	35973197	35973274	+
GWHAAZE00000002	CDS	35966799	35967011	+
GWHAAZE00000002	CDS	35968793	35968914	+
GWHAAZE00000002	CDS	35969017	35969163	+
GWHAAZE00000002	CDS	35969828	35970053	+
GWHAAZE00000002	CDS	35970999	35971072	+
GWHAAZE00000002	CDS	35971216	35971308	+
GWHAAZE00000002	CDS	35971507	35971624	+
GWHAAZE00000002	CDS	35971715	35971858	+
GWHAAZE00000002	CDS	35973197	35973274	+

Transcript Sequence
>GWHTAAZE007011 ATGGAGCTCTCATCATTCTCCCTTTCTCTCCCTCTTCCAATCTCACCTAAATCTCCTCATCGCCATAGAAACACACCCACTTCAGCGACATTCAAAGCTACTGATTTTATCTTGAAATCCTCCAATACCTTTTCTTCAACTCGTCGGTCGTATAATCATAAAAGCCGATCAAACACTATTTCAAGACTACAACACAAGCGTATTTCCATCAAGGCCTGCACTCAAACTGGCACTGCTGGTTCTGATCCAGTATTGAATAAAGTTTCAGAATTCAGAGATGCATTCTGGAGATTTCTAAGGCCCCACACGATACGTGGAACAGCATTAGGGTCAATTTCTTTAGTAACAAGAGCTTTGATTGAGAACCCTACTCTGATAAGGTGGTCATTATTGTCGAAAGCGTTTGCTGGTCTTCTCGCTCTAATATGTGGCAATGGTTATATAGTGGGCATTAATCAGATCTATGATATTGGAATCGACAAGGTAAACAAGCCTTATTTACCCATAGCGGCAGGAGATCTTTCAGTTCAGTCTGCATGGATTTTGGTGTCATTGTTTGCAGTGGCTGGTCTTTTTATTGTTGGAATGAACTTTGGTCCATTTATTACCTCCCTTTATTCACTTGGTCTATTTTTGGGAACCATTTACTCTGTTCCCCCATTTAGAATGAAGAGATTTGCTGTTGTAGCATTTCTTATAATTGCCACGGTGAGAGGTTTTCTTCTTAACTTTGGTGTATATTATGCAACAAGAGCTGCCCTCGGCTTAACATTTGAGTGGAGCTCACCAGTGGCTTTCATCACAACTTTTGTAACTTTGTTCGCTCTGGTTATTGCCATAACTAAAGATCTTCCAGACGTAGAGGGTGATCGCAAGTTTCAGATATCTACTTTGGCAACAACGCTTGGGGTTAGAAACATTGCTTTTCTTGGTTCCGGGCTTCTACTGATAAATTATGTTGGTTCTGTAGTTGCAGCATTATGCATGCCTCAAATTTGCATGCATTTGAAATCTTGTTTAATTCTCCCCTTTTGTGGCAATGATGATTATAAGCATAAGGTCAATTCATTGCAGGCTTTTAGGAGCAGCTTGATGATACCCGTGCATACTGTCTTGGCATTGAGTGTAATTTTCCAGGCATGGTTACTAGAACGAGCGAATTATACTAAGGTAACACCTGTGTTGAAAGAGGGTTTTGTGGGCTTCGTCAAGTAA

Network for GWHGAAZE007003

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0198

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01040.19	UbiA	119	321	2.30E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12501	HST	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.338
	SRR3591706	second leaf	65.438
	SRR3591707	mature leaf	47.357
	SRR3591708	Shoot apex	36.186
	SRR3591709	Stem	17.190
	SRR3591710	White floral bud	18.594
	SRR3591711	White flower	18.981
	SRR3591712	Green floral bud	22.114
	SRR3591713	Yellow flower	16.338
SRP173429	SRR8316895	Juvenile bud stage	19.889
	SRR8316896	Juvenile bud stage	20.103
	SRR8316897	Juvenile bud stage	13.081
	SRR8316894	Third green stage	9.718
	SRR8316900	Third green stage	33.238
	SRR8316901	Third green stage	23.136
	SRR8316898	Complete white stage	13.260
	SRR8316899	Complete white stage	34.320
	SRR8316903	Complete white stage	18.546
	SRR8316902	Silver flowering stage	13.112
	SRR8316904	Silver flowering stage	22.971
	SRR8316905	Silver flowering stage	11.767
	SRR8316906	Gold flowering stage	29.251
	SRR8316907	Gold flowering stage	23.403
	SRR8316908	Gold flowering stage	25.973
SRP132670	SRR6706286	Control	8.462
	SRR6706287	Light intensity 50%	12.008
	SRR6706288	Light intensity 20%	12.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.684
	CNS0095593	Slightly white alabastrum(diploid) 2	15.659
	CNS0095594	Slightly white alabastrum(diploid) 3	8.759
	CNS0095595	Whole white alabastrum(diploid) 2	13.799
	CNS0095596	Whole white alabastrum(diploid) 3	12.776
	CNS0095597	Whole white alabastrum(diploid) 4	11.973
	CNS0095598	Silvery flower (diploied) 1	17.635
	CNS0095599	Silvery flower (diploied) 2	20.807
	CNS0095600	Silvery flower (diploied) 3	30.755
	CNS0095601	Golden flower (diploid) 1	16.484
	CNS0095602	Golden flower (diploid) 2	27.278
	CNS0095603	Golden flower (diploid) 3	24.331
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.656
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.834
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.060
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.122
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.788
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.162
	CNS0095610	Silvery flower (tetraploid) 1	32.941
	CNS0095611	Silvery flower (tetraploid) 2	46.821
	CNS0095612	Silvery flower (tetraploid) 3	39.797
	CNS0095613	Golden flower (tetraploid) 1	14.562
	CNS0095614	Golden flower (tetraploid) 2	26.539
	CNS0095615	Golden flower (tetraploid) 3	15.780
CRA001975	CRR073297	Stem 1	13.147
	CRR073298	Stem 2	13.809
	CRR073299	Stem 3	9.008
	CRR073300	Leaf 1	12.208
	CRR073301	Leaf 2	7.902
	CRR073302	Leaf 3	9.035
	CRR073303	Juvenile bud 1	12.519
	CRR073304	Juvenile bud 2	9.184
	CRR073305	Juvenile bud 3	7.728
	CRR073306	Third green 1	8.003
	CRR073307	Third green 2	5.484
	CRR073308	Third green 3	6.741
	CRR073309	Second white 1	10.108
	CRR073310	Second white 2	7.735
	CRR073311	Second white 3	6.240
	CRR073312	Silver flowering 1	4.546
	CRR073313	Silver flowering 2	6.915
	CRR073314	Silver flowering 3	4.001
	CRR073315	Gold flowering 1	27.367
	CRR073316	Gold flowering 2	50.568
	CRR073317	Gold flowering 3	23.767
	CRR073318	Tawny withering 1	7.348
	CRR073319	Tawny withering 2	6.650
	CRR073320	Tawny withering 3	4.226