Gene detail

Detail information of GWHGAAZE007005

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002281426.1	PREDICTED: eukaryotic translation initiation factor 3 subunit C [Vitis vinifera]
Swissprot	tr\|Q9XHM1\|EIF3C_MEDTR	Eukaryotic translation initiation factor 3 subunit C {ECO:0000255\|HAMAP-Rule:MF_03002}
trEMBL	tr\|F6HLF0\|F6HLF0_VITVI	Eukaryotic translation initiation factor 3 subunit C {ECO:0000256\|HAMAP-Rule:MF_03002}
TAIR10	AT3G56150.2	eukaryotic translation initiation factor 3C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35998708	36003551	+
GWHAAZE00000002	mRNA	35998708	36003551	+
GWHAAZE00000002	exon	35998708	35998731	+
GWHAAZE00000002	exon	35998882	36000708	+
GWHAAZE00000002	exon	36001443	36001486	+
GWHAAZE00000002	exon	36002513	36003551	+
GWHAAZE00000002	CDS	35998708	35998731	+
GWHAAZE00000002	CDS	35998882	36000708	+
GWHAAZE00000002	CDS	36001443	36001486	+
GWHAAZE00000002	CDS	36002513	36003551	+

Transcript Sequence
>GWHTAAZE007013 ATGGCGTCAAAATTCTGGACTCAGGGTGATAGCGAAACCGAGGATGAGGAGAGTGACTATGAGCAGGATGATGATAATGCCGTGGCACCTGGCGATTCTACTGTCACAGCCGCCGGAAGTAAGTATCTTACGGGTAATGCAAGCGATAGTGACGACTCCGATGGTCAAAAGCGTGTCGTTAGATCTGCTAAGGACAAGCGTTTTGAGGAGATGTCTGCTACCGTTGATCAGATGAAGAATGCAATGAAGATCAATGATTGGGTCAGCTTGCAAGAGAGCTTTGACAAGATTAATAAACAACTTGAGAAGGTCATGAGGGTCACCGAATCTGTTAAGGTCCCGAACCTTTACATTAAGTCTCTTGTGATGTTGGAGGAATTCTTGAATCAAGCTATGGCCAATAAGGAAGCGAAGAAGAAGATGAGTAGCAGTAATGCCAAGGCTTTGAATTCAATGAAACAGAAGCTGAAGAAGAATAACAAGCAGTACGAGGAATTAATTATTAAGTGCAAAGAGAGTCCCGAGAGTGAGGATGAAGAGGATGCTGATGAGCAGTCTGAAGAGGAGGAAGATGAGGATTCAGAGTTTGAGGAGGACCCAACGAAGATTCCGATGGGGTCTGATTCGGGTGAGGATGATGATGATGATGATGAAGAAGAGGAAGGTGTAGACGATGCTGATGATGCCGGTACTGGCTGGGAGAAAAAGATGAGCAAGAAAAATAAGCTTATGGACAAGCAGTTTAAGGACCCGAGTCAGATCACATGGGAGACAGTCAACAAGAAGTTTAAAGAGATTGTTGCTGCTCGAGGTAGGAAGGGAACTGGAAGGATTGAGCTGGTCGAGCAGCTTACTTTCTTGACCAGGGTGGCTAAGACCCCAGCTCAGAAGCTTGAAATTCTCTTCAGTGTTGTGTCCGCCCAATTTGACGTTAATCCAAGTCTTAGCGGACACATGCCCATAAACGTGTGGAAGAAGTGCGTACAGAATATGCTTGTTATACTAGACATACTTGCCCAGTACCCAAACATTATAGTTGATGACACGGTGGAGCCCGATGAGAACGAAACCCAAAAAGGAGTGGATATTAATGGTCCTATTCGGATTTGGGGAAACCTAGCTGCATTCCTTGAAAAAATCGACGCCGAGTTCTTTAAGAGCCTCCAGTGCATTGATCCCCACACTCGCGAGTATGTTGAGAGGCTCAAGGATGAGCCCATGTTCTTTGTTTTGGCTCAAAACGTTCAAGAATATCTAGAACGGGTCGGTGATTACAGGGGCGCTGCAAAGGTTGCTCTTAAGCGGGTTGAACTCACATATTATAAACCACAGGAGGTATATGCTGCCATGAAGAAGTTGGCCGAGCAAACCGAAGATCAAGAGACTGGAGAGTCGGAATCTGGTGTGGAACCCAAGATGGTCGAGGAAAGTAGGGGCCCACCTGCATTTGTTGTCACCCCTAAGGTTGTTTCTCGAAAACCCACGTTTCCTGAGAGCAGTAGGACACTAATGGATGTGTTAGTTTCCCTCATATACAAGTATGGTGATGAGCGAACTAAGGCGCGGGCAATGATTTGTGACATATACCACCATGCTATTTTGGATGAATTTTCGACAGCTCGAGATTTGTTGTTGATGAGTCACTTGCAGGATAGTATTCAACATATGGACATTTTGACGCAGATACTTTTTAACAGGGCAATGGCACAACTTGGACTATGTGCATTTAGGGTTGGACTTATTGCTGAAGGACACGGTTGCCTTTCTGAACTATATTCCGGTGGCAGGGTGAAAGAGTTGCTAGCACAGGGTGTTTCCCAAAGTCGATACCATGAGAAGACTCCTGAACAGTGTGCTACTGTTATCAGGATAGGGGGGATAGTTGATATACACCTCATTTACTATTTTGAACTATTACTTTTCCATCAGGAACGGCTAGAAAGGAGACGGCAAATGCCTTACCACATGCACATAAATCTTGAGCTTCTCGAAGCAGTCCATCTCATATGCGCCATGCTACTCGAGGTCCCAAACATGGCTGCCAACAGCCACGACGCAAAGCGCAAAGTCCTAAGCAAGACACTCCGGCGGCTCCTTGAAGTGGGTGAAAGACAAACCTTCACTGGCCCGCCTGAAAATGTGCGGGACCATGTACTTGCTGCCACCCGGGCCCTCAAAAAGGGTGATTTCCAAAAAGCGTTTGATGTTATCAAGTCACTCGACATTTGGAGACTTTTGCAGGACCATGATAATGTCCTTGAGATGCTCAAAGCCAAGATCAAAGAAGAGGCTCTTAGGACTTATCTTTTCACTTATTCAGGTTCGTATGATTCTCTTTCCTTGGACCAGTTGGCCAAAATGTTTGACTTAACGGAAACCGGGACCCACAGTATTGTGAGCAAGATGATGATCACCGACGAGCTCCATGCGAGCTGGGACCAACCGACCCAGTGCATGATCTTCCACGACGTTGAGCACACTAGGCTGCAGGCTCTGGCATTCGAGCTAACTGAGAAGCTATCGGTCTTAGCCGAGAGTAACGAGAGGGCCGTTGAGGCTCGGGTTGGTGGGGGTGGGTTGGACACCCTGCCCCTAAGACGAAGGGATGGTCAGGACTATGCAGCTGCCACCGCCGGTGGTGGTGGCGGCAAGTGGCAGGACAATCAGTCCTACACTCAGGGTAGGCAAGGGAGTAGCAGTGGGCGGACCGGGTACGGTGGTGGACGACCTCAGGGTCCTGGGCAGAGCGGCGGGTATTCGCGGGACCGGCCGGGTCAAAGAACAGGCGGGTATTCATCTGGTTATCAGAGCACTCGCTATCAAGATACCGCGTATGGTGGACCCGGAAGATCCTATCAGAGTGGTTCAGTGAGGGGAGGGCAGATGGATGGTTCAACCCGCATGGTCAATCTGAATAGAGGGGTTCGTGCATAG

Network for GWHGAAZE007005

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05470.13	eIF-3c_N	48	618	3.10E-209
PF05470.13	eIF-3c_N	642	686	6.60E-22
PF01399.28	PCI	695	822	2.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03252	EIF3C	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0005852	cellular_component	eukaryotic translation initiation factor 3 complex
GO:0003743	molecular_function	translation initiation factor activity
GO:0031369	molecular_function	translation initiation factor binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.140
	SRR3591706	second leaf	15.988
	SRR3591707	mature leaf	14.701
	SRR3591708	Shoot apex	27.753
	SRR3591709	Stem	17.636
	SRR3591710	White floral bud	23.293
	SRR3591711	White flower	28.396
	SRR3591712	Green floral bud	22.352
	SRR3591713	Yellow flower	20.076
SRP173429	SRR8316895	Juvenile bud stage	16.025
	SRR8316896	Juvenile bud stage	25.246
	SRR8316897	Juvenile bud stage	11.577
	SRR8316894	Third green stage	10.569
	SRR8316900	Third green stage	24.883
	SRR8316901	Third green stage	24.479
	SRR8316898	Complete white stage	6.723
	SRR8316899	Complete white stage	24.203
	SRR8316903	Complete white stage	16.789
	SRR8316902	Silver flowering stage	10.259
	SRR8316904	Silver flowering stage	15.801
	SRR8316905	Silver flowering stage	6.342
	SRR8316906	Gold flowering stage	21.767
	SRR8316907	Gold flowering stage	21.748
	SRR8316908	Gold flowering stage	20.867
SRP132670	SRR6706286	Control	30.323
	SRR6706287	Light intensity 50%	31.034
	SRR6706288	Light intensity 20%	30.358
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.376
	CNS0095593	Slightly white alabastrum(diploid) 2	16.632
	CNS0095594	Slightly white alabastrum(diploid) 3	19.774
	CNS0095595	Whole white alabastrum(diploid) 2	14.785
	CNS0095596	Whole white alabastrum(diploid) 3	15.620
	CNS0095597	Whole white alabastrum(diploid) 4	14.920
	CNS0095598	Silvery flower (diploied) 1	20.415
	CNS0095599	Silvery flower (diploied) 2	16.347
	CNS0095600	Silvery flower (diploied) 3	28.002
	CNS0095601	Golden flower (diploid) 1	18.662
	CNS0095602	Golden flower (diploid) 2	28.251
	CNS0095603	Golden flower (diploid) 3	27.830
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.941
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.044
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.037
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.068
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.573
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.256
	CNS0095610	Silvery flower (tetraploid) 1	26.861
	CNS0095611	Silvery flower (tetraploid) 2	25.404
	CNS0095612	Silvery flower (tetraploid) 3	38.140
	CNS0095613	Golden flower (tetraploid) 1	14.723
	CNS0095614	Golden flower (tetraploid) 2	24.993
	CNS0095615	Golden flower (tetraploid) 3	23.559
CRA001975	CRR073297	Stem 1	33.816
	CRR073298	Stem 2	32.517
	CRR073299	Stem 3	34.389
	CRR073300	Leaf 1	36.745
	CRR073301	Leaf 2	33.414
	CRR073302	Leaf 3	24.712
	CRR073303	Juvenile bud 1	28.033
	CRR073304	Juvenile bud 2	19.694
	CRR073305	Juvenile bud 3	41.160
	CRR073306	Third green 1	23.097
	CRR073307	Third green 2	16.995
	CRR073308	Third green 3	21.307
	CRR073309	Second white 1	24.757
	CRR073310	Second white 2	29.011
	CRR073311	Second white 3	32.870
	CRR073312	Silver flowering 1	37.995
	CRR073313	Silver flowering 2	38.554
	CRR073314	Silver flowering 3	34.404
	CRR073315	Gold flowering 1	16.946
	CRR073316	Gold flowering 2	24.262
	CRR073317	Gold flowering 3	23.912
	CRR073318	Tawny withering 1	26.835
	CRR073319	Tawny withering 2	22.279
	CRR073320	Tawny withering 3	22.877