Gene detail

Detail information of GWHGAAZE007009

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002281426.1	PREDICTED: eukaryotic translation initiation factor 3 subunit C [Vitis vinifera]
Swissprot	tr\|Q9XHM1\|EIF3C_MEDTR	Eukaryotic translation initiation factor 3 subunit C {ECO:0000255\|HAMAP-Rule:MF_03002}
trEMBL	tr\|F6HLF0\|F6HLF0_VITVI	Eukaryotic translation initiation factor 3 subunit C {ECO:0000256\|HAMAP-Rule:MF_03002}
TAIR10	AT3G56150.2	eukaryotic translation initiation factor 3C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	36079279	36084114	+
GWHAAZE00000002	mRNA	36079279	36084114	+
GWHAAZE00000002	exon	36079279	36079302	+
GWHAAZE00000002	exon	36079453	36081270	+
GWHAAZE00000002	exon	36083113	36084114	+
GWHAAZE00000002	CDS	36079279	36079302	+
GWHAAZE00000002	CDS	36079453	36081270	+
GWHAAZE00000002	CDS	36083113	36084114	+

Transcript Sequence
>GWHTAAZE007017 ATGGCGTCAAGATTCTGGACTCAGGGTGACAGTGAAACCGAGGATGAGGAGAGTGATTATGAGCAGGATGATAATGCCGTGGCACCTGGTGATTCTACAGTCACGGCCGCCGGAAGTAGGTATCTTCAGGGTAATGCAAGCGACAGTGACGACTCCGATGGTCAAAAGCGTGTTGTTAGATCTGCTAAGGACAAGCGTTTTGAGGAGATGTCTGCTACTGTTGATCAGATGAAGAATGCAATGAAGATCAATGATTGGGTCAGCTTGCAAGAGAGCTTTGACAAAATTAATAAACAACTTGAGAAGGTCATGAGGGTCACCGAATCTGTTAAGGTCCCGAACCTTTACATTAAGGCTCTTGTGATGTTGGAGGAATTCTTGAATCAAGCTATGGCCAATAAGGAAGCTAAGAAGAAGATGAGTAGCAGTAATGCTAAGGCTTTGAATTCAATGAAACAGAAGCTAAAGAAGAATAACAAGCAGTATGAGGAATTAATTATTAAGTGCAAAGAGAGTCCCGAGAGTGAGGATGAAGAGGATGCTGATGAGCAGTCTGAAGAGGAGGAAGATGAGGACTCAGAGTTCGAGGAGGACCCAACGAAGATTCCTATGGCGTCTGATTCGGGTGAGGATGATGATGATGAAGAAGAGGAAGGTGGAGACGATGCTGATGATGCCGGTACTGGCTGGGAGAAAAAGATGAGCAAGAAAAATAAGCTCATGGACAAGCAGTTTAAGGACCCAAGTCAGATCACATGGGAGACAGTCAACAAGAAGTTTAAAGAGATTGTTGCTGCTCGAGGTAGAAAGGGAACTGGAAGGATCGAGCTGGTCGAGCAGCTTACTTTCTTGACCAGGGTGGCTAAGACCCCAGCTCAGAAGCTTGAAATTCTCTTCAGTGTTGTGTCCGCCCAATTTGATGTTAATCCAAGCCTTAGCGGACACATGCCCATAAACGTGTGGAAGAAGTGCGTACAAAATATGCTTGTTATACTAGACATACTCGCCCAGTACCCAAACATTATAGTTGATGACACAGTGGAGCCCGATGAGAACGAAACCCAAAAAGGAGTGGATGTCAAGGGTCCTATTCAGATTTGGGGGAACCTAGCTGCATTCCTTGAAAAAATTGACGCCGAGTTCTTTAAGAGCCTCCAGTGCATTGATCCCCACACTCGTGAGTACGTTGAGAGGCTCCGGGATGAGCCCATGTTCTTCGTTTTGGCTCAAAACATTCAAGAATATCTAGAACGGGTCGGTGATTACAAGGCCGCTGCAAAGGTTGCTCTTAAGCGGGTTGAACTCACATATTATAAACCACAGGAGGTATATGCTGCCATGAAGAAGTTGGCTGAGCAAACCGAAGATCAAGAGACTGGAGAGTCGGAATCTGGTGCGGAACCCAAGATGGTCGAGGAAAGTAGGGGCCCACCTGCATTTGTTGTCACTCCTGAGGTTGTTTCTAGAAAGCCCACATTTCCTGAGAGTAGCAGGACACTAATGGATATGTTAGTTTCCCTCATATACAAGTATGGTGATGAGCGAACTAAGGCTCGGGCAATGATTTGTGACATTTACCACCATGCTATTTTGGACGAATTTTCAACATCTCGGGATTTGTTGCTGATGAGTCACTTGCAGGATAGTATTCAACATATGGACATTTTGACACAGATACTTTTTAACAGGGCAATGGCACAACTTGGACTATGTGCATTTAGGGTTGGACTTATTGCTGAAGGACACGGTTGCCTTTCTGAACTATATTCAGGTGGCAGGGTGAAAGAGTTGCTTGCCCAGGGTGTTTCCCAAAGTCGGTATCATGAGAAGACTCCAGAACAGGAACGGCTTGAAAGGAGACGGCAAATGCCTTACCACATGCACATAAACCTTGAGCTTCTCGAGGCGGTCCATCTCATATGTGCCATGCTACTTGAGGTCCCAAACATGGCTGCCAACAGCCACGACGCAAAGCGCAAAGTCATAAGCAAGACACTCCGGCGGCTCCTTGAAGTGAGTGAAAGACAAACCTTCACCGGCCCGCCTGAAAACGTGCGGGACCACGTACTTGCTGCCACCCGGGCCCTCAAAAAGGGTGATTTCCAAAAAGCATTTGATGTTATCAAGTCACTGGACGTTTGGAGACTTTTGCGGGATCGTGATAACGTCCTCGAGATGCTCAGAGCCAAGATCAAAGAAGAGGCTCTTAGGACCTATCTTTTCACTTATTCGGGCTCATATGATTCTCTTTCCTTGGACCAGTTGGCCAAAATGTTTGACTTAACGGAAACTGCCACCCACAGTATTGTGAGCAAGATGATGATCACCGACGAGCTCCATGCGAGCTGGGACCAACCAACCCAGTGCATGATCTTCCACGACGTCGAGCACACAAGGCTGCAGGCTCTGGCGTTCGAGCTAACTGAGAAGCTATCTGTCTTAGCCGAGAGTAACGAGCGGGCCATCGAGGCTCGGATTGGTGGGGGTGGGTTGGACACCCTGCCCTTAAGACGAAGGGATGGTCAGGACTACGCAGCTGCCGCCGCCGGTGGTGGTGGCAAGTGGCAGGATAACCAGTCCTACACTCAGGGTAGGCAAGGGAGTAGCGGTGGGCGGACTGGGTACGGTGGTGGAAGACCACTGGGTCCTGGGCAGAGTGGCGGATATTCTCGGGACCGGGCAGGTCAAAGAACAGGCGGGTATTCGTCAGGTTATCAGAGCACTCGCTATCAAGATACTGCGTATGGTGGGTCCGGGAGATCTTATCAGAGTGGTTCGGTGAGGGGAGGGCAGATGGATGGTTCAACCCGCATGGTCAGTCTCAATAGAGGGGTTCGCACCTAG

Network for GWHGAAZE007009

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05470.13	eIF-3c_N	47	657	1.80E-239
PF01399.28	PCI	666	793	3.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03252	EIF3C	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0005852	cellular_component	eukaryotic translation initiation factor 3 complex
GO:0003723	molecular_function	RNA binding
GO:0003743	molecular_function	translation initiation factor activity
GO:0031369	molecular_function	translation initiation factor binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.573
	SRR3591706	second leaf	44.483
	SRR3591707	mature leaf	42.119
	SRR3591708	Shoot apex	58.526
	SRR3591709	Stem	44.868
	SRR3591710	White floral bud	56.180
	SRR3591711	White flower	81.793
	SRR3591712	Green floral bud	68.550
	SRR3591713	Yellow flower	52.824
SRP173429	SRR8316895	Juvenile bud stage	38.742
	SRR8316896	Juvenile bud stage	52.941
	SRR8316897	Juvenile bud stage	22.793
	SRR8316894	Third green stage	21.160
	SRR8316900	Third green stage	59.490
	SRR8316901	Third green stage	55.970
	SRR8316898	Complete white stage	20.237
	SRR8316899	Complete white stage	66.939
	SRR8316903	Complete white stage	39.562
	SRR8316902	Silver flowering stage	24.894
	SRR8316904	Silver flowering stage	32.441
	SRR8316905	Silver flowering stage	15.412
	SRR8316906	Gold flowering stage	51.130
	SRR8316907	Gold flowering stage	55.642
	SRR8316908	Gold flowering stage	67.538
SRP132670	SRR6706286	Control	77.786
	SRR6706287	Light intensity 50%	75.361
	SRR6706288	Light intensity 20%	77.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.986
	CNS0095593	Slightly white alabastrum(diploid) 2	50.300
	CNS0095594	Slightly white alabastrum(diploid) 3	41.749
	CNS0095595	Whole white alabastrum(diploid) 2	38.229
	CNS0095596	Whole white alabastrum(diploid) 3	38.294
	CNS0095597	Whole white alabastrum(diploid) 4	34.243
	CNS0095598	Silvery flower (diploied) 1	52.699
	CNS0095599	Silvery flower (diploied) 2	51.353
	CNS0095600	Silvery flower (diploied) 3	75.961
	CNS0095601	Golden flower (diploid) 1	44.203
	CNS0095602	Golden flower (diploid) 2	77.041
	CNS0095603	Golden flower (diploid) 3	75.719
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.605
	CNS0095606	Slightly white alabastrum(tetraploid) 3	109.178
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.578
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.653
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.575
	CNS0095610	Silvery flower (tetraploid) 1	86.648
	CNS0095611	Silvery flower (tetraploid) 2	83.352
	CNS0095612	Silvery flower (tetraploid) 3	71.987
	CNS0095613	Golden flower (tetraploid) 1	48.704
	CNS0095614	Golden flower (tetraploid) 2	79.066
	CNS0095615	Golden flower (tetraploid) 3	83.477
CRA001975	CRR073297	Stem 1	90.925
	CRR073298	Stem 2	85.213
	CRR073299	Stem 3	89.524
	CRR073300	Leaf 1	92.815
	CRR073301	Leaf 2	88.636
	CRR073302	Leaf 3	70.720
	CRR073303	Juvenile bud 1	85.427
	CRR073304	Juvenile bud 2	66.333
	CRR073305	Juvenile bud 3	132.989
	CRR073306	Third green 1	60.334
	CRR073307	Third green 2	46.734
	CRR073308	Third green 3	60.001
	CRR073309	Second white 1	83.171
	CRR073310	Second white 2	62.506
	CRR073311	Second white 3	79.073
	CRR073312	Silver flowering 1	96.799
	CRR073313	Silver flowering 2	113.637
	CRR073314	Silver flowering 3	85.679
	CRR073315	Gold flowering 1	40.031
	CRR073316	Gold flowering 2	59.454
	CRR073317	Gold flowering 3	63.017
	CRR073318	Tawny withering 1	70.468
	CRR073319	Tawny withering 2	56.784
	CRR073320	Tawny withering 3	71.645