Detail information of GWHGAAZE007012


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009590923.11.7832E-171PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana tomentosiformis]
Swissprottr|O80582|FBK46_ARATH5E-62F-box/kelch-repeat protein At2g44130
trEMBLtr|M1C6Q7|M1C6Q7_SOLTU5E-165Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400060940}
TAIR10AT2G44130.17E-54Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3616289236164058-
GWHAAZE00000002mRNA3616289236164058-
GWHAAZE00000002exon3616289236164058-
GWHAAZE00000002CDS3616289236164058-
Transcript Sequence

Network for GWHGAAZE007012

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01344.26Kelch_11582010.00017
PF01344.26Kelch_12032491.70E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.401
SRR3591706second leaf8.487
SRR3591707mature leaf14.793
SRR3591708Shoot apex13.525
SRR3591709Stem19.613
SRR3591710White floral bud25.211
SRR3591711White flower21.769
SRR3591712Green floral bud18.486
SRR3591713Yellow flower7.511
SRP173429 SRR8316895Juvenile bud stage 2.601
SRR8316896Juvenile bud stage 6.308
SRR8316897Juvenile bud stage 1.573
SRR8316894Third green stage 2.138
SRR8316900Third green stage 6.219
SRR8316901Third green stage 3.456
SRR8316898Complete white stage 2.241
SRR8316899Complete white stage 14.897
SRR8316903Complete white stage 4.465
SRR8316902Silver flowering stage2.976
SRR8316904Silver flowering stage2.664
SRR8316905Silver flowering stage1.644
SRR8316906Gold flowering stage 5.719
SRR8316907Gold flowering stage 6.467
SRR8316908Gold flowering stage 7.081
SRP132670SRR6706286Control14.479
SRR6706287Light intensity 50%10.645
SRR6706288Light intensity 20%12.470
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.934
CNS0095593Slightly white alabastrum(diploid) 27.620
CNS0095594Slightly white alabastrum(diploid) 36.084
CNS0095595Whole white alabastrum(diploid) 29.746
CNS0095596Whole white alabastrum(diploid) 36.584
CNS0095597Whole white alabastrum(diploid) 48.072
CNS0095598Silvery flower (diploied) 110.467
CNS0095599Silvery flower (diploied) 27.554
CNS0095600Silvery flower (diploied) 35.625
CNS0095601Golden flower (diploid) 16.212
CNS0095602Golden flower (diploid) 213.471
CNS0095603Golden flower (diploid) 314.515
CNS0095604Slightly white alabastrum(tetraploid) 14.375
CNS0095605Slightly white alabastrum(tetraploid) 25.555
CNS0095606Slightly white alabastrum(tetraploid) 39.359
CNS0095607Whole white alabastrum(tetraploid) 16.096
CNS0095608Whole white alabastrum(tetraploid) 29.172
CNS0095609Whole white alabastrum(tetraploid) 35.319
CNS0095610Silvery flower (tetraploid) 18.024
CNS0095611Silvery flower (tetraploid) 211.244
CNS0095612Silvery flower (tetraploid) 321.993
CNS0095613Golden flower (tetraploid) 12.753
CNS0095614Golden flower (tetraploid) 210.081
CNS0095615Golden flower (tetraploid) 31.426
CRA001975CRR073297Stem 113.406
CRR073298Stem 216.316
CRR073299Stem 327.770
CRR073300Leaf 15.734
CRR073301Leaf 211.954
CRR073302Leaf 310.069
CRR073303Juvenile bud 18.251
CRR073304Juvenile bud 21.791
CRR073305Juvenile bud 310.897
CRR073306Third green 13.058
CRR073307Third green 22.664
CRR073308Third green 32.251
CRR073309Second white 12.350
CRR073310Second white 21.030
CRR073311Second white 30.526
CRR073312Silver flowering 10.324
CRR073313Silver flowering 20.396
CRR073314Silver flowering 30.303
CRR073315Gold flowering 115.672
CRR073316Gold flowering 211.197
CRR073317Gold flowering 314.779
CRR073318Tawny withering 137.473
CRR073319Tawny withering 219.627
CRR073320Tawny withering 324.374