Gene detail

Detail information of GWHGAAZE007013

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008241157.1	5.2837E-159	PREDICTED: histone-lysine N-methyltransferase ATXR4 [Prunus mume]
Swissprot	tr\|Q9FG08\|ATXR4_ARATH	1E-136	Histone-lysine N-methyltransferase ATXR4 (Precursor)
trEMBL	tr\|M5VVV3\|M5VVV3_PRUPE	5E-153	Uncharacterized protein {ECO:0000313\|EMBL:EMJ05507.1} (Fragment)
TAIR10	AT5G06620.1	4E-100	SET domain protein 38

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	36197310	36203841	+
GWHAAZE00000002	mRNA	36197310	36203841	+
GWHAAZE00000002	exon	36197310	36197660	+
GWHAAZE00000002	exon	36199926	36199981	+
GWHAAZE00000002	exon	36200458	36200584	+
GWHAAZE00000002	exon	36202444	36202513	+
GWHAAZE00000002	exon	36202642	36202821	+
GWHAAZE00000002	exon	36202921	36202992	+
GWHAAZE00000002	exon	36203723	36203841	+
GWHAAZE00000002	CDS	36197310	36197660	+
GWHAAZE00000002	CDS	36199926	36199981	+
GWHAAZE00000002	CDS	36200458	36200584	+
GWHAAZE00000002	CDS	36202444	36202513	+
GWHAAZE00000002	CDS	36202642	36202821	+
GWHAAZE00000002	CDS	36202921	36202992	+
GWHAAZE00000002	CDS	36203723	36203841	+

Transcript Sequence
>GWHTAAZE007021 ATGTATCGATTGGGTGGTTATAATCGTTGGGTTTCTCAATTCAAAGTCCAAATTTCCCAAACAAAGCTATTTCCCACCTTCAATTTCTCAACAACAGCAGTCGAGTCGCCGCCGAGTCAACCCGCACCTCCGCCGATTCAAGTTCTGCTCACCGAGTCGGCGGGACGAGGTGTGTTCGCGACTCGGAGGATCGGAGGGGGCGAACTCATCCACACTGCCAAACCAATCGTCTCTCATCCTTCTCTATCTTCAATCCACAATGTATGCTATTTTTGCCTTAAGAGGATTGGGAACAAAGCAATTTCTCACGAAGTCTCATTTTGCAGTGAAAAATGTAGAGAACAAGCTCAGGGTTTCTATGAAGTCGAAAAGCAAGCAGATTGGTCAGCCTTTGATGGTCACTGCCGAGCTCGAGGTTTAAAATATCCACTTGTCGTCAAGCGGTTGGCTTGCATGGTCATATCAGGGTTGACTTCTGCAGACACTGTTGACATTCTTCAACCTGCTAATTTATCTTCTGAAATGATTTTACAGATGGAAGAGGAGTTTGGCTTGCTAAGAAGTGCCCTCGAAGATGCAGAGTTGACAGGCGAACAGATGACGTTTCTAACCAAGCAATGGTACATTGGTGTGCTGGCGCGGATTCGTATAAATGCCTTTCGAATTGAATTGGCTGGAGGATTTTACGAAGATCTTCTTTCATCAGCTGCAGCATCAGTAGAAGCAGAAGCTGCTGTTGGAAATTCCGTTTATATGCTTCCATCCTTCTACAATCACGACTGCGATCCCAATGCGCACATTTTATGGATAGAAAATGTGGATGCAAGATTGAAGGCTCTTCGCGACATTGAAGCAGGTGAAGAACTTAGGATATGTTATATTGACGCGAGCATGGATTATGATGCTAGACAAACTCTCTTGTCCCAAGGCTTTGGTTTTCATTGCACTTGTCTTCGTTGCTTGTCCAAGGATTAA

Network for GWHGAAZE007013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	55	293	3.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
K11426	SMYD	Metabolic pathways	map01100
K11426	SMYD	Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.334
	SRR3591706	second leaf	8.812
	SRR3591707	mature leaf	9.546
	SRR3591708	Shoot apex	8.346
	SRR3591709	Stem	5.729
	SRR3591710	White floral bud	2.342
	SRR3591711	White flower	1.292
	SRR3591712	Green floral bud	1.613
	SRR3591713	Yellow flower	1.394
SRP173429	SRR8316895	Juvenile bud stage	1.425
	SRR8316896	Juvenile bud stage	3.971
	SRR8316897	Juvenile bud stage	2.646
	SRR8316894	Third green stage	1.308
	SRR8316900	Third green stage	3.631
	SRR8316901	Third green stage	3.113
	SRR8316898	Complete white stage	0.491
	SRR8316899	Complete white stage	2.103
	SRR8316903	Complete white stage	0.514
	SRR8316902	Silver flowering stage	0.264
	SRR8316904	Silver flowering stage	0.371
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	1.017
	SRR8316907	Gold flowering stage	1.014
	SRR8316908	Gold flowering stage	0.683
SRP132670	SRR6706286	Control	2.210
	SRR6706287	Light intensity 50%	2.405
	SRR6706288	Light intensity 20%	2.862
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.800
	CNS0095593	Slightly white alabastrum(diploid) 2	4.867
	CNS0095594	Slightly white alabastrum(diploid) 3	7.015
	CNS0095595	Whole white alabastrum(diploid) 2	6.225
	CNS0095596	Whole white alabastrum(diploid) 3	6.051
	CNS0095597	Whole white alabastrum(diploid) 4	9.556
	CNS0095598	Silvery flower (diploied) 1	3.036
	CNS0095599	Silvery flower (diploied) 2	1.716
	CNS0095600	Silvery flower (diploied) 3	1.634
	CNS0095601	Golden flower (diploid) 1	1.466
	CNS0095602	Golden flower (diploid) 2	1.325
	CNS0095603	Golden flower (diploid) 3	1.698
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.340
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.871
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.559
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.426
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.348
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.711
	CNS0095610	Silvery flower (tetraploid) 1	3.888
	CNS0095611	Silvery flower (tetraploid) 2	3.910
	CNS0095612	Silvery flower (tetraploid) 3	4.516
	CNS0095613	Golden flower (tetraploid) 1	2.337
	CNS0095614	Golden flower (tetraploid) 2	2.741
	CNS0095615	Golden flower (tetraploid) 3	0.486
CRA001975	CRR073297	Stem 1	2.740
	CRR073298	Stem 2	3.720
	CRR073299	Stem 3	3.669
	CRR073300	Leaf 1	5.334
	CRR073301	Leaf 2	3.485
	CRR073302	Leaf 3	5.238
	CRR073303	Juvenile bud 1	6.500
	CRR073304	Juvenile bud 2	3.549
	CRR073305	Juvenile bud 3	2.133
	CRR073306	Third green 1	1.270
	CRR073307	Third green 2	1.238
	CRR073308	Third green 3	0.834
	CRR073309	Second white 1	2.688
	CRR073310	Second white 2	0.937
	CRR073311	Second white 3	2.214
	CRR073312	Silver flowering 1	1.157
	CRR073313	Silver flowering 2	0.515
	CRR073314	Silver flowering 3	1.259
	CRR073315	Gold flowering 1	4.984
	CRR073316	Gold flowering 2	4.886
	CRR073317	Gold flowering 3	4.842
	CRR073318	Tawny withering 1	5.238
	CRR073319	Tawny withering 2	4.045
	CRR073320	Tawny withering 3	5.336