Gene detail

Detail information of GWHGAAZE007014

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009769707.1	0	PREDICTED: fatty acyl-CoA reductase 2 [Nicotiana sylvestris]
Swissprot	tr\|Q08891\|FACR2_ARATH	0	Fatty acyl-CoA reductase 2
trEMBL	tr\|U6A8C0\|U6A8C0_PETHY	0	Male sterility protein 2 {ECO:0000313\|EMBL:AHA15849.1}
TAIR10	AT3G11980.1	5E-159	Jojoba acyl CoA reductase-related male sterility protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	36207177	36214313	+
GWHAAZE00000002	mRNA	36207177	36214313	+
GWHAAZE00000002	exon	36207177	36207558	+
GWHAAZE00000002	exon	36210307	36210410	+
GWHAAZE00000002	exon	36210503	36210702	+
GWHAAZE00000002	exon	36210951	36211051	+
GWHAAZE00000002	exon	36211428	36211644	+
GWHAAZE00000002	exon	36212677	36212758	+
GWHAAZE00000002	exon	36213414	36213811	+
GWHAAZE00000002	exon	36214154	36214313	+
GWHAAZE00000002	CDS	36207177	36207558	+
GWHAAZE00000002	CDS	36210307	36210410	+
GWHAAZE00000002	CDS	36210503	36210702	+
GWHAAZE00000002	CDS	36210951	36211051	+
GWHAAZE00000002	CDS	36211428	36211644	+
GWHAAZE00000002	CDS	36212677	36212758	+
GWHAAZE00000002	CDS	36213414	36213811	+
GWHAAZE00000002	CDS	36214154	36214313	+

Transcript Sequence
>GWHTAAZE007022 ATGGGGGCTTTGTCTCTACCCTCCATCTACAAGCCACCAAAAAGGACAACCGACCTAGGTTTCTCCGGCGACCCGTGGCGGTGCTCCTCCTTGAAGAGTGGCGGTGGTGGGAAAAATATAGTTTATTGCCAAAGCGGTGGAGGGAGCAGTGGGGGTGGCGGGGGTTCTACTTTGGTGGTGGAGAGTGGTGGAAGTATAATAGTGACACCAAATGAGAATAAGAATAGTAATAATATTGGAATGAAGGATTTGGTGCCTTTTGATGCACCAACAAAAACACCACCTCTTGTGGATCATATGAATGAGGATGGTATTGGCATTGTCAATTTTATTAGAGGAAAGAGCTTTCTCATTACTGGTGCTACTGGCTTCTTGGCTAAAGTTCTTATAGAGAAGATATTAAGGACAGTGCCAGATGTGGGTACAATATTTCTCTTGATAAAGGCAAAGAACAAGGAAGCTGCCATGGCCAGATTGGAAAATGAAATTATTAATGCTGAACTTTTCAAGATTCTACAAAAAAAATATGGAAAATCCTATCAAGATTTCATGTTGAGCAAACTGGTCCCTGTGGTTGGAAATGTATGTGAATCTAACCTTGGGATAGAGGAGGACATGGCAAAGATTATTGCAAAAGATGTGGACATAATTGTGAATTCAGCAGCTAATACTACTTTTGATGAAAGATATGATGTATCCCTTGACATCAACACTGGTGGACCTAGCCGCCTTATTAGCTTTGCAAAGAAGTTCAGGAAACTTAATCTCTTCCTACAAGTGTCAACAGCTTATGTAAATGGACAAAGACAAGGGAAAATAATGGAAAAACCATTCAACCAAGGAGATAGCATAGCAAGGGAGAGTCTCCTATTGGGAACTCAAGAATTATCGGTCCCTTTATTGGATGTGGAAGATGAAATCAAGTTGGTTTTTGAATCTAAGCAATCTTTTGAAGACAAAATTGCAATTTTGGCCCAAAGAATGAAAGAACTTGGTTCACAAAGGATGATCGATCCGGTTATTTTGTACTATGGGAAAGGGCAGCTAAGTGGATTTTTGGCCGACCCCAATGGAGTCATTGATGTAGTTCCAGCCGATATGGTCGTTAATGCGACCCTTGCAGCAATGGCAAAGCACGGGGCGGCTGGAAAATCCGAAAGTAACATTTACCAAGTTACTTCATCGGTTGTGAACCCGTTAGCGATCCAAGATTTGGCCACTTTGCTCTATGACCACTTCAATACTTTGCCTTGTGTGGACTCGAACGGGAGACCAATCCACGTTCCGGCTATGAAATTATTCGACTCAATGGAAGATTTTTCGTCTCACCTTTGGCGAGACGCAATAAATAGAAGTGGTCTTGCAACTATGGCTAGTCCTAATGGGAAATTGTCTAGGAAAATTGAGAATATTTGCAAGAAGTTGGTGGAGCAAGCAAAGTACTTGGCTAGTATATATGAACCCTACGCATTTTATGGTGGAAGGTTTGACAATAGCAACACACAAAGGTTGATGGAGTGCATGTCTGAGCAAGAAAGGAGGGCATTTGGATTTGATGTGGAGAACATAAATTGGAAAGATTACATCTCAAATGTTCATATTCCTGGTCTAAGAAAGCATGTTATGAAGGGGAGATGGATGTGA

Network for GWHGAAZE007014

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07993.13	NAD_binding_4	118	294	2.40E-49
PF07993.13	NAD_binding_4	333	371	9.20E-05
PF03015.20	Sterile	470	543	5.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13356	FAR	Cutin, suberine and wax biosynthesis	map00073
		Peroxisome	map04146
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.096
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.551
	SRR3591711	White flower	2.348
	SRR3591712	Green floral bud	0.570
	SRR3591713	Yellow flower	0.201
SRP173429	SRR8316895	Juvenile bud stage	0.026
	SRR8316896	Juvenile bud stage	0.024
	SRR8316897	Juvenile bud stage	0.105
	SRR8316894	Third green stage	0.113
	SRR8316900	Third green stage	0.770
	SRR8316901	Third green stage	0.185
	SRR8316898	Complete white stage	0.226
	SRR8316899	Complete white stage	0.884
	SRR8316903	Complete white stage	0.891
	SRR8316902	Silver flowering stage	0.702
	SRR8316904	Silver flowering stage	0.594
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.110
	SRR8316907	Gold flowering stage	0.673
	SRR8316908	Gold flowering stage	0.237
SRP132670	SRR6706286	Control	0.153
	SRR6706287	Light intensity 50%	0.133
	SRR6706288	Light intensity 20%	0.200
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.107
	CNS0095593	Slightly white alabastrum(diploid) 2	0.082
	CNS0095594	Slightly white alabastrum(diploid) 3	0.271
	CNS0095595	Whole white alabastrum(diploid) 2	0.307
	CNS0095596	Whole white alabastrum(diploid) 3	0.230
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.984
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.202
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.070
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.206
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.112
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.073
	CNS0095610	Silvery flower (tetraploid) 1	1.345
	CNS0095611	Silvery flower (tetraploid) 2	0.287
	CNS0095612	Silvery flower (tetraploid) 3	0.110
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.319
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.028
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.087
	CRR073301	Leaf 2	0.281
	CRR073302	Leaf 3	0.226
	CRR073303	Juvenile bud 1	0.029
	CRR073304	Juvenile bud 2	0.069
	CRR073305	Juvenile bud 3	0.356
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.391
	CRR073308	Third green 3	0.507
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000