Gene detail

Detail information of GWHGAAZE007046

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001267898.1	1.0788E-105	promoter-binding protein SPL9 [Vitis vinifera]
Swissprot	tr\|Q700W2\|SPL9_ARATH	8E-55	Squamosa promoter-binding-like protein 9
trEMBL	tr\|D6QZ29\|D6QZ29_VITVI	4E-106	Promoter-binding protein SPL9 {ECO:0000313\|EMBL:ADG36380.1}
TAIR10	AT2G42200.1	7E-38	squamosa promoter binding protein-like 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	37093654	37099011	+
GWHAAZE00000002	mRNA	37093654	37099011	+
GWHAAZE00000002	exon	37093654	37094009	+
GWHAAZE00000002	exon	37097383	37097522	+
GWHAAZE00000002	exon	37098489	37098781	+
GWHAAZE00000002	exon	37098880	37099011	+
GWHAAZE00000002	CDS	37093654	37094009	+
GWHAAZE00000002	CDS	37097383	37097522	+
GWHAAZE00000002	CDS	37098489	37098781	+
GWHAAZE00000002	CDS	37098880	37099011	+

Transcript Sequence
>GWHTAAZE007054 ATGGAGATGAATTCCGGTTCTTCATCTTCTTCCTCCGGGTCGCCGGAGTTACTAAACGGGTTGCAATTCGGGCAGAAAATATACTTTGAGGATGTGGGTATTGGAGTTCCGGCGAAATCTTGCGGTGGGTTGCCGCCGCCGGTGCCGGCGCCAGCCAAGAAGGGGGTGAGGAGTGGGGGTGGGGTTGTTCAGGTTGGGCAACAACAACCACCTAGGTGTCAGGTAGAAGGTTGTAGAGTAGATCTGAGTGAAGTGAAGGCCTATTATTCAAGGCATAAAGTCTGTGGGGTGCACTCTAAGTCCCCTATGGTCATTGTTAATGGTCTTGAACAGAGGTTCTGCCAGCAGTGTAGCAGGTTCCATCAGTTGCCGGAGTTTGACCAAGGGAAAAGAAGTTGCCGGAGACGCCTGGCTGGCCACAACGAGCGCCGGAGGAAGCCACCTCCTCGATCTCTGTTGTCCGTTCGATACGGAACTCTATCTTCATCTACCGTTGAAAATGGCAGCAGAGGAGGGTTTCTGATGGACTTCTCCGCATACCCAAGGCAAAATGGAAGAAATTCATGGCCCATTGCAAGATCATCAGATTATCCTCCACACAGCCTTCAAGGTCCCGCAAACACGACCTCATCATATTCCAGTCCAACTGTTCGTCCGGGAAGGTGTCTCACAGACTCAACCTGTGCTCTCTCTCTTCTGTCAAATCAGTCCTACAGTTCAAGAACTGAAGCTCCAAGCCTCGGACCAACTTACTTCCCGAACCCCAGTGCGCCACACACGTCTCAACCGCTATCCAACAGTGGTCAGTACTGTGGCGAGCTTGAGTGGGCCCCCCAGCAAAGTGGAAGGCAATATGTAGAAATTGAGCACCCTAGGGCTTATGATTCTTCTTCTGCTCAGCATATTGACTGGTCACTTTGA

Network for GWHGAAZE007046

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	73	146	1.90E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.845
	SRR3591706	second leaf	18.410
	SRR3591707	mature leaf	3.374
	SRR3591708	Shoot apex	21.226
	SRR3591709	Stem	12.699
	SRR3591710	White floral bud	0.263
	SRR3591711	White flower	1.196
	SRR3591712	Green floral bud	2.535
	SRR3591713	Yellow flower	0.702
SRP173429	SRR8316895	Juvenile bud stage	4.869
	SRR8316896	Juvenile bud stage	2.740
	SRR8316897	Juvenile bud stage	2.159
	SRR8316894	Third green stage	1.816
	SRR8316900	Third green stage	2.503
	SRR8316901	Third green stage	2.175
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.324
	SRR8316903	Complete white stage	0.498
	SRR8316902	Silver flowering stage	0.072
	SRR8316904	Silver flowering stage	0.085
	SRR8316905	Silver flowering stage	0.019
	SRR8316906	Gold flowering stage	0.085
	SRR8316907	Gold flowering stage	0.067
	SRR8316908	Gold flowering stage	0.164
SRP132670	SRR6706286	Control	1.474
	SRR6706287	Light intensity 50%	1.102
	SRR6706288	Light intensity 20%	1.751
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.001
	CNS0095593	Slightly white alabastrum(diploid) 2	4.847
	CNS0095594	Slightly white alabastrum(diploid) 3	2.925
	CNS0095595	Whole white alabastrum(diploid) 2	1.952
	CNS0095596	Whole white alabastrum(diploid) 3	1.665
	CNS0095597	Whole white alabastrum(diploid) 4	0.987
	CNS0095598	Silvery flower (diploied) 1	0.797
	CNS0095599	Silvery flower (diploied) 2	0.462
	CNS0095600	Silvery flower (diploied) 3	0.592
	CNS0095601	Golden flower (diploid) 1	1.188
	CNS0095602	Golden flower (diploid) 2	0.387
	CNS0095603	Golden flower (diploid) 3	0.576
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.359
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.148
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.883
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.467
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.564
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.737
	CNS0095610	Silvery flower (tetraploid) 1	0.342
	CNS0095611	Silvery flower (tetraploid) 2	0.480
	CNS0095612	Silvery flower (tetraploid) 3	0.675
	CNS0095613	Golden flower (tetraploid) 1	0.072
	CNS0095614	Golden flower (tetraploid) 2	0.386
	CNS0095615	Golden flower (tetraploid) 3	0.159
CRA001975	CRR073297	Stem 1	11.349
	CRR073298	Stem 2	9.776
	CRR073299	Stem 3	13.091
	CRR073300	Leaf 1	4.138
	CRR073301	Leaf 2	2.573
	CRR073302	Leaf 3	3.489
	CRR073303	Juvenile bud 1	2.283
	CRR073304	Juvenile bud 2	0.597
	CRR073305	Juvenile bud 3	2.721
	CRR073306	Third green 1	0.120
	CRR073307	Third green 2	0.210
	CRR073308	Third green 3	0.260
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.144
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.063
	CRR073315	Gold flowering 1	10.953
	CRR073316	Gold flowering 2	7.726
	CRR073317	Gold flowering 3	5.740
	CRR073318	Tawny withering 1	5.340
	CRR073319	Tawny withering 2	1.193
	CRR073320	Tawny withering 3	5.276