Detail information of GWHGAAZE007061


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG02480.17.24433E-24Ras-related RABA4d -like protein [Gossypium arboreum]
Swissprottr|P25766|RLGP1_ORYSJ5E-22Ras-related protein RGP1
trEMBLtr|M0S1C0|M0S1C0_MUSAM1E-23Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P19620_001}
TAIR10AT3G12160.19E-18RAB GTPase homolog A4D

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3735978137359987-
GWHAAZE00000002mRNA3735978137359987-
GWHAAZE00000002exon3735978137359987-
GWHAAZE00000002CDS3735978137359987-
Transcript Sequence

Network for GWHGAAZE007061

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.059
SRR3591706second leaf0.460
SRR3591707mature leaf1.037
SRR3591708Shoot apex2.460
SRR3591709Stem5.172
SRR3591710White floral bud4.946
SRR3591711White flower0.000
SRR3591712Green floral bud14.073
SRR3591713Yellow flower0.050
SRP173429 SRR8316895Juvenile bud stage 7.288
SRR8316896Juvenile bud stage 11.652
SRR8316897Juvenile bud stage 5.201
SRR8316894Third green stage 4.063
SRR8316900Third green stage 12.780
SRR8316901Third green stage 16.326
SRR8316898Complete white stage 0.208
SRR8316899Complete white stage 0.114
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.096
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.315
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.313
SRP132670SRR6706286Control6.854
SRR6706287Light intensity 50%6.957
SRR6706288Light intensity 20%5.084
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.933
CNS0095593Slightly white alabastrum(diploid) 28.940
CNS0095594Slightly white alabastrum(diploid) 323.489
CNS0095595Whole white alabastrum(diploid) 216.482
CNS0095596Whole white alabastrum(diploid) 321.498
CNS0095597Whole white alabastrum(diploid) 425.753
CNS0095598Silvery flower (diploied) 10.240
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.229
CNS0095601Golden flower (diploid) 10.021
CNS0095602Golden flower (diploid) 20.029
CNS0095603Golden flower (diploid) 30.617
CNS0095604Slightly white alabastrum(tetraploid) 121.011
CNS0095605Slightly white alabastrum(tetraploid) 217.955
CNS0095606Slightly white alabastrum(tetraploid) 30.284
CNS0095607Whole white alabastrum(tetraploid) 124.121
CNS0095608Whole white alabastrum(tetraploid) 224.871
CNS0095609Whole white alabastrum(tetraploid) 311.258
CNS0095610Silvery flower (tetraploid) 10.017
CNS0095611Silvery flower (tetraploid) 20.574
CNS0095612Silvery flower (tetraploid) 30.826
CNS0095613Golden flower (tetraploid) 10.177
CNS0095614Golden flower (tetraploid) 20.893
CNS0095615Golden flower (tetraploid) 30.449
CRA001975CRR073297Stem 18.315
CRR073298Stem 210.038
CRR073299Stem 35.414
CRR073300Leaf 19.535
CRR073301Leaf 25.135
CRR073302Leaf 37.678
CRR073303Juvenile bud 14.341
CRR073304Juvenile bud 27.404
CRR073305Juvenile bud 31.182
CRR073306Third green 11.577
CRR073307Third green 20.161
CRR073308Third green 30.834
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 21.176
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.553
CRR073316Gold flowering 21.594
CRR073317Gold flowering 30.227
CRR073318Tawny withering 12.182
CRR073319Tawny withering 25.661
CRR073320Tawny withering 33.815