Gene detail

Detail information of GWHGAAZE007076

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002283010.2	PREDICTED: LOW QUALITY PROTEIN: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Vitis vinifera]
Swissprot	tr\|Q9FL51\|Y5694_ARATH	Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 (Precursor)
trEMBL	tr\|F6HL59\|F6HL59_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55166.1}
TAIR10	AT5G06940.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	37732368	37736229	-
GWHAAZE00000002	mRNA	37732368	37736229	-
GWHAAZE00000002	exon	37734069	37736229	-
GWHAAZE00000002	exon	37732368	37732747	-
GWHAAZE00000002	CDS	37734069	37736229	-
GWHAAZE00000002	CDS	37732368	37732747	-

Transcript Sequence
>GWHTAAZE007084 ATGAACTCTCTCTCAACCTGGTCCAACACCACCTCTACCCATTACTGTAACTGGACTGGAATCACTTGCACGTCTTCACTTGTTTCTTCCCTCAATCTCAAAACCCTAAATCTCTCTGGTGAAATCTCACCGTCTATTTGCCAACTCCAAAATCTTAAAAGCCTCAATCTTGCTGATAATCTCTTCAATCAGCCCATTCCCTTGCATCTCTCAAAGTGTGATTCTCTTGAGAGTTTGAATCTCAGCAATAATCTCATTTGGGGTACTATTTTGGGGCAGATTTCTCAGTTTGGGTCACTTAGAGTTCTTGATTTGAGTAGGAATCACATTGAGGGGAGAATCCCAGAGAGTATTGGGCTTTTGAAGAATCTTGAAGTTCTCAATCTTGGTAGCAATTTGCTTTCAGGTAGTGTTCCATTGGTTTTTGGTAATTTCACTGATTTGACTGTTCTTGATTTGTCTCAAAATCCATTCTTGGCGAGTGAGGTTCCTAGTGATATTGGTGGGCTTTTTAAACTTGAGCAGCTTTTGTTACAGAGCTCTGGTTTTTATGGTGAAATACCAAGTTCTTTTGAGGGTTTGAAGGGTTTGTCCATTTTAGACCTTTCTCAGAACAATCTTACTGGTAGGGTACCCCAGAATCTTGGGGTATCTCTCACAAACCTTGTGTCATTTGACGTTTCACAGAATAGGCTTTTTGGGTCATTCCCATATGGGGTTTGTGAAAATGGCAAAGGGCTTATAAGCCTTAGTCTTCATACTAATTCCTTCAATGGCTCTATACCCAATGACTCCATTGATAAATGCTTGAATCTCGAGAGGTTTCAAGTTCAAGAAAATGGTTTCTCTGGGGATTTTCCAAATGGGTTATGGTCATTGCCGAGAATCAAGCTTATCAGAGCCGAAAACAATCGATTTTCGGGTGAAATACCTGATTCTATATCGATGGCTAATCAATTGGAGCAAGTTCAAATAGACAACAACAGCTTCATTTCTAAAGTTCCTCAAGGCCTTGGATTGGTTAAAAGCTTGTATAGATTCTCTGCATCTCTTAATGGCTTATACGGCGATCTTCCTCCGAATTTTTGCGATTCGCCCGTTATGAGTATCATCAATTTCTCCCACAATTATCTTTCGGGTCCGATCCCGGAGTTGAAAAAATGCAAGAAATTAGTCTCGCTGTCTCTTGCAGATAACAATTTTGTTGGTGAAATCCCAAATTCACTTGCTGAATTGCCAGTTTTAACTTACCTTGACCTTTCCCATAATAATCTCACCGGTCCAATCCCACAAGAGCTTCAAAACTTGAAGCTTGCTCTGTTTAATGTATCCTTTAACCGACTATCGGGTAGTGTTCCATTCTCACTAATTTCGGGCCTACCTGCTTCGTTCTTGCAAGGAAATCCAGGGTTGTGCGGACCTGGGTTGCCCAATTCTTGTTTGGATTACAAGATTAAGCACAAAGTAACTGGTCTTTCAAAACTTGCTTGTGCCCTCATTTCTATAGCTTTAGCTCTTGCAATTGTGGTTCTTGCTATCGGGCTTTTCGTAATTCATCGATCGTCCAAGAGGAAATCTCAAATGGGTGTTTGGCATTCGGTTTTTTTCTATCCTCTTCGAGTTACTGAGAATGACTTGATTATGTCAATGGATGAAAAGTCTGCAAGAGGAAATGGTGGAGCTTTCGGAAGAGTTTACATTATAAACTTGCCAAGTGGTGAACTGGTTGCTGTAAAGAAGATGTTAAATTTCGGTACCCAATCTTTGAAAACTTTGAAATCCGAGGTTAAGACATTGGCAAAGATAAGGCATAAAAACATCATCAAGATTATGGGTTTTTGCCATTCGGATGATTCGATGTTCCTGATTTACGAATTTTTACAGAAAGGTAGTCTTGGGGATTTGATTGGACGGTCGGATTTTGAGTTACCTTGGAGTGTGAGGTTGAGGATTGCAATTGGAGTTGCTCAAGGACTTGCTTACCTTCACAAGGACTATTCTCCACATTTACTTCACAGAAATGTGAAATCGAAGAATGTTCTTTTGGACGCGGATTTTGAACCGAAGCTCACAGATTTTGCTCTTGATCGGATCATAGGTGAAAATGCATTTCGGTCATCATTGGCATCGGAATCTGCATCTTCTTGCTACATAGCACCAGAATGTGGGTACACTAAAAAAGCCACTGAACAAATGGACACATACAGCTTTGGTGTAATTTTGCTGGAGCTTGTGACCGGCCGGCCAGCCGAGCAAATCGAGGAAACAGAATCGATGGAATCTCTTGATGTAGTCAAATGGGTGAGAAGGAAAATCAACATTACTAATGGGGAATCCCAAGTTCTTGACCCAAGGATTTTTAATTCATCCAAACACGAGATTTTGGGTGCTCTTGAAATTGCCCTACGCTGCACTTCCGTGATGCCAGAGAAACGACCACCAATGTATGAAGTTGTGAGGGCACTACAGTGTCTCGGCTCAAGGACTTGCCGCCAAGAAAATGATTCCTCTGCTTCTGATGAGTGTTCAATTCCTCTTTGA

Network for GWHGAAZE007076

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	2	23	0.0009
PF13855.7	LRR_8	99	157	3.60E-09
PF13855.7	LRR_8	172	232	1.40E-06
PF13855.7	LRR_8	390	448	1.50E-06
PF07714.18	PK_Tyr_Ser-Thr	560	763	1.10E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.650
	SRR3591706	second leaf	7.184
	SRR3591707	mature leaf	1.288
	SRR3591708	Shoot apex	16.998
	SRR3591709	Stem	9.611
	SRR3591710	White floral bud	2.942
	SRR3591711	White flower	6.333
	SRR3591712	Green floral bud	4.154
	SRR3591713	Yellow flower	0.417
SRP173429	SRR8316895	Juvenile bud stage	5.074
	SRR8316896	Juvenile bud stage	3.654
	SRR8316897	Juvenile bud stage	1.785
	SRR8316894	Third green stage	1.994
	SRR8316900	Third green stage	3.116
	SRR8316901	Third green stage	2.960
	SRR8316898	Complete white stage	0.332
	SRR8316899	Complete white stage	4.326
	SRR8316903	Complete white stage	1.195
	SRR8316902	Silver flowering stage	0.151
	SRR8316904	Silver flowering stage	0.221
	SRR8316905	Silver flowering stage	0.070
	SRR8316906	Gold flowering stage	0.569
	SRR8316907	Gold flowering stage	0.079
	SRR8316908	Gold flowering stage	0.535
SRP132670	SRR6706286	Control	2.524
	SRR6706287	Light intensity 50%	2.267
	SRR6706288	Light intensity 20%	2.352
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.090
	CNS0095593	Slightly white alabastrum(diploid) 2	3.446
	CNS0095594	Slightly white alabastrum(diploid) 3	2.391
	CNS0095595	Whole white alabastrum(diploid) 2	2.546
	CNS0095596	Whole white alabastrum(diploid) 3	1.616
	CNS0095597	Whole white alabastrum(diploid) 4	1.922
	CNS0095598	Silvery flower (diploied) 1	5.819
	CNS0095599	Silvery flower (diploied) 2	3.593
	CNS0095600	Silvery flower (diploied) 3	2.839
	CNS0095601	Golden flower (diploid) 1	3.802
	CNS0095602	Golden flower (diploid) 2	3.709
	CNS0095603	Golden flower (diploid) 3	4.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.297
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.584
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.927
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.428
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.879
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.690
	CNS0095610	Silvery flower (tetraploid) 1	0.352
	CNS0095611	Silvery flower (tetraploid) 2	2.050
	CNS0095612	Silvery flower (tetraploid) 3	0.914
	CNS0095613	Golden flower (tetraploid) 1	0.053
	CNS0095614	Golden flower (tetraploid) 2	0.329
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	9.225
	CRR073298	Stem 2	7.462
	CRR073299	Stem 3	10.247
	CRR073300	Leaf 1	4.913
	CRR073301	Leaf 2	4.737
	CRR073302	Leaf 3	3.578
	CRR073303	Juvenile bud 1	4.757
	CRR073304	Juvenile bud 2	4.318
	CRR073305	Juvenile bud 3	4.701
	CRR073306	Third green 1	0.085
	CRR073307	Third green 2	0.206
	CRR073308	Third green 3	0.473
	CRR073309	Second white 1	0.178
	CRR073310	Second white 2	0.031
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.023
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.026
	CRR073315	Gold flowering 1	0.412
	CRR073316	Gold flowering 2	0.679
	CRR073317	Gold flowering 3	0.861
	CRR073318	Tawny withering 1	13.978
	CRR073319	Tawny withering 2	7.432
	CRR073320	Tawny withering 3	12.980