Detail information of GWHGAAZE007096


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008460763.19.2288E-157PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo]
Swissprottr|Q9SCM3|RS24_ARATH1E-14840S ribosomal protein S2-4
trEMBLtr|A0A0A0KZQ4|A0A0A0KZQ4_CUCSA6E-157Uncharacterized protein {ECO:0000313|EMBL:KGN53852.1}
TAIR10AT1G58684.15E-119Ribosomal protein S5 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3818290338185753-
GWHAAZE00000002mRNA3818290338185753-
GWHAAZE00000002exon3818290338183100-
GWHAAZE00000002exon3818504338185753-
GWHAAZE00000002CDS3818504338185753-
GWHAAZE00000002CDS3818290338183100-
Transcript Sequence

Network for GWHGAAZE007096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00333.21Ribosomal_S51011654.90E-30
PF03719.16Ribosomal_S5_C1842501.90E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02981RP-S2e, RPS2 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf301.748
SRR3591706second leaf156.205
SRR3591707mature leaf66.608
SRR3591708Shoot apex385.927
SRR3591709Stem128.917
SRR3591710White floral bud137.950
SRR3591711White flower187.574
SRR3591712Green floral bud310.113
SRR3591713Yellow flower114.377
SRP173429 SRR8316895Juvenile bud stage 228.184
SRR8316896Juvenile bud stage 298.895
SRR8316897Juvenile bud stage 152.082
SRR8316894Third green stage 97.140
SRR8316900Third green stage 396.156
SRR8316901Third green stage 387.872
SRR8316898Complete white stage 69.047
SRR8316899Complete white stage 284.805
SRR8316903Complete white stage 93.175
SRR8316902Silver flowering stage66.587
SRR8316904Silver flowering stage61.107
SRR8316905Silver flowering stage37.653
SRR8316906Gold flowering stage 127.446
SRR8316907Gold flowering stage 141.998
SRR8316908Gold flowering stage 174.777
SRP132670SRR6706286Control301.383
SRR6706287Light intensity 50%297.954
SRR6706288Light intensity 20%304.237
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1356.571
CNS0095593Slightly white alabastrum(diploid) 2406.442
CNS0095594Slightly white alabastrum(diploid) 3344.426
CNS0095595Whole white alabastrum(diploid) 2294.424
CNS0095596Whole white alabastrum(diploid) 3340.580
CNS0095597Whole white alabastrum(diploid) 4197.239
CNS0095598Silvery flower (diploied) 1197.178
CNS0095599Silvery flower (diploied) 2199.839
CNS0095600Silvery flower (diploied) 3140.446
CNS0095601Golden flower (diploid) 1132.849
CNS0095602Golden flower (diploid) 2119.401
CNS0095603Golden flower (diploid) 3120.395
CNS0095604Slightly white alabastrum(tetraploid) 1453.955
CNS0095605Slightly white alabastrum(tetraploid) 2435.385
CNS0095606Slightly white alabastrum(tetraploid) 3583.172
CNS0095607Whole white alabastrum(tetraploid) 1279.105
CNS0095608Whole white alabastrum(tetraploid) 2207.807
CNS0095609Whole white alabastrum(tetraploid) 3514.605
CNS0095610Silvery flower (tetraploid) 1211.094
CNS0095611Silvery flower (tetraploid) 2150.758
CNS0095612Silvery flower (tetraploid) 3122.351
CNS0095613Golden flower (tetraploid) 191.619
CNS0095614Golden flower (tetraploid) 2160.968
CNS0095615Golden flower (tetraploid) 387.882
CRA001975CRR073297Stem 1232.505
CRR073298Stem 2255.250
CRR073299Stem 3301.536
CRR073300Leaf 1233.985
CRR073301Leaf 2266.593
CRR073302Leaf 3335.117
CRR073303Juvenile bud 1236.454
CRR073304Juvenile bud 2216.261
CRR073305Juvenile bud 3277.300
CRR073306Third green 157.970
CRR073307Third green 253.907
CRR073308Third green 351.733
CRR073309Second white 175.831
CRR073310Second white 245.771
CRR073311Second white 339.493
CRR073312Silver flowering 154.070
CRR073313Silver flowering 271.725
CRR073314Silver flowering 358.098
CRR073315Gold flowering 166.132
CRR073316Gold flowering 272.215
CRR073317Gold flowering 387.245
CRR073318Tawny withering 1186.345
CRR073319Tawny withering 2144.050
CRR073320Tawny withering 3205.165