Detail information of GWHGAAZE007111


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009768681.12.81167E-69PREDICTED: F-box protein At5g07610-like [Nicotiana sylvestris]
Swissprottr|Q9FLS0|FB253_ARATH5E-38F-box protein At5g07610
trEMBLtr|A0A061FCK9|A0A061FCK9_THECC1E-61F-box family protein {ECO:0000313|EMBL:EOY12194.1}
TAIR10AT5G07610.17E-33F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3850206838503318+
GWHAAZE00000002mRNA3850206838503318+
GWHAAZE00000002exon3850206838503318+
GWHAAZE00000002CDS3850206838503318+
Transcript Sequence

Network for GWHGAAZE007111

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box24581.40E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.582
SRR3591706second leaf3.035
SRR3591707mature leaf5.334
SRR3591708Shoot apex3.473
SRR3591709Stem10.991
SRR3591710White floral bud5.767
SRR3591711White flower6.400
SRR3591712Green floral bud6.255
SRR3591713Yellow flower1.950
SRP173429 SRR8316895Juvenile bud stage 5.468
SRR8316896Juvenile bud stage 6.426
SRR8316897Juvenile bud stage 2.426
SRR8316894Third green stage 2.987
SRR8316900Third green stage 7.832
SRR8316901Third green stage 7.094
SRR8316898Complete white stage 4.333
SRR8316899Complete white stage 10.489
SRR8316903Complete white stage 6.852
SRR8316902Silver flowering stage3.440
SRR8316904Silver flowering stage4.686
SRR8316905Silver flowering stage1.923
SRR8316906Gold flowering stage 5.413
SRR8316907Gold flowering stage 4.512
SRR8316908Gold flowering stage 6.799
SRP132670SRR6706286Control6.711
SRR6706287Light intensity 50%6.524
SRR6706288Light intensity 20%6.111
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.243
CNS0095593Slightly white alabastrum(diploid) 26.887
CNS0095594Slightly white alabastrum(diploid) 34.191
CNS0095595Whole white alabastrum(diploid) 24.701
CNS0095596Whole white alabastrum(diploid) 35.090
CNS0095597Whole white alabastrum(diploid) 44.607
CNS0095598Silvery flower (diploied) 13.160
CNS0095599Silvery flower (diploied) 24.662
CNS0095600Silvery flower (diploied) 39.202
CNS0095601Golden flower (diploid) 15.474
CNS0095602Golden flower (diploid) 28.511
CNS0095603Golden flower (diploid) 37.336
CNS0095604Slightly white alabastrum(tetraploid) 15.353
CNS0095605Slightly white alabastrum(tetraploid) 24.783
CNS0095606Slightly white alabastrum(tetraploid) 311.226
CNS0095607Whole white alabastrum(tetraploid) 15.255
CNS0095608Whole white alabastrum(tetraploid) 23.032
CNS0095609Whole white alabastrum(tetraploid) 310.023
CNS0095610Silvery flower (tetraploid) 110.368
CNS0095611Silvery flower (tetraploid) 29.670
CNS0095612Silvery flower (tetraploid) 38.712
CNS0095613Golden flower (tetraploid) 14.390
CNS0095614Golden flower (tetraploid) 26.013
CNS0095615Golden flower (tetraploid) 33.468
CRA001975CRR073297Stem 14.740
CRR073298Stem 24.793
CRR073299Stem 32.692
CRR073300Leaf 13.459
CRR073301Leaf 23.606
CRR073302Leaf 32.746
CRR073303Juvenile bud 12.733
CRR073304Juvenile bud 21.957
CRR073305Juvenile bud 34.094
CRR073306Third green 11.726
CRR073307Third green 22.239
CRR073308Third green 32.207
CRR073309Second white 11.331
CRR073310Second white 21.850
CRR073311Second white 30.927
CRR073312Silver flowering 10.559
CRR073313Silver flowering 21.339
CRR073314Silver flowering 30.601
CRR073315Gold flowering 12.088
CRR073316Gold flowering 24.062
CRR073317Gold flowering 32.517
CRR073318Tawny withering 12.419
CRR073319Tawny withering 21.451
CRR073320Tawny withering 32.744